1 Response_reg#1
5-114 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:5:7.4e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY93_RS01560
Response regulator OmpR family
Clostridium sp. AF28-12 · GCF_003435225
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435225#DWY93_RS01560Stable P2CS identifier used across views.
GenomeGCF_003435225Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:152:3.89e-20:228:78:77- Raw architecture: Response_reg:5:7.4e-35:114:111:111#Trans_reg_C:152:3.89e-20:228:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435225::NZ_QWGJ01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span352300-354446Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY93_01560RefSeq proteinWP_015553345.1
Context group ID
GCF_003435225::NZ_QWGJ01000001.1::G00005Context members
DWY93_RS01560DWY93_RS01565
Partner locus tags
DWY93_RS01560DWY93_RS01565
Partner old locus tags
DWY93_01560DWY93_01565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015553345.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY93_RS01560Primary locus identifier stored in the genes table.
Old locus tagDWY93_01560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval352 300-353 004 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span352 300-354 446 ntGCF_003435225::NZ_QWGJ01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435225::NZ_QWGJ01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span352 300-354 446 nt2 147 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
352 300 nt354 446 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY93_RS01560GCF_003435225#DWY93_RS01560
RROmpRCurrent focus
352 300-353 004 nt · Forward (+)
DWY93_RS01565GCF_003435225#DWY93_RS01565
HKClassic
353 001-354 446 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS05475Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1055476
Simplified PFAM architecture for RROC_1055476
PFAM domain coverage: 186 / 234 aa (79.5%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1055476
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS05475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 241 · GCF_003435225
AssemblyASM343522v1 · Scaffoldhaploid
Genome composition3 514 663 bp · 48,5% GCClostridium sp. AF28-12
Signal transduction countsGenes 67 · HK 31 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key