1 Response_reg#1
3-114 aa · 112 aa · 41.3% of protein
Raw token
Response_reg:3:1.89e-23:114:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY93_RS01165
Response regulator LytTR family
Clostridium sp. AF28-12 · GCF_003435225
ClassRRTypeLytTRLength271 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435225#DWY93_RS01165Stable P2CS identifier used across views.
GenomeGCF_003435225Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length271 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage211 / 271 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa271 aa
Domain-by-domain annotation2 items
2 LytTR#2
171-269 aa · 99 aa · 36.5% of protein
Raw token
LytTR:171:7e-28:269:99:98- Raw architecture: Response_reg:3:1.89e-23:114:114:111#LytTR:171:7e-28:269:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435225::NZ_QWGJ01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span247212-249932Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY93_01165RefSeq proteinWP_117469125.1
Context group ID
GCF_003435225::NZ_QWGJ01000001.1::G00003Context members
DWY93_RS01160DWY93_RS01165
Partner locus tags
DWY93_RS01160DWY93_RS01165
Partner old locus tags
DWY93_01160DWY93_01165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117469125.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY93_RS01165Primary locus identifier stored in the genes table.
Old locus tagDWY93_01165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval249 117-249 932 nt816 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span247 212-249 932 ntGCF_003435225::NZ_QWGJ01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435225::NZ_QWGJ01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span247 212-249 932 nt2 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
247 212 nt249 932 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY93_RS01160GCF_003435225#DWY93_RS01160
HKClassic
247 212-248 909 nt · Forward (+)
DWY93_RS01165GCF_003435225#DWY93_RS01165
RRLytTRCurrent focus
249 117-249 932 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435225#DWY93_RS01165The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0612512
Simplified PFAM architecture for RROC_0612512
PFAM domain coverage: 209 / 271 aa (77.1%)
1 aa271 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-113] | LytTR[171-268]
- Domain count: 2
- Matched identifier: RROC_0612512
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; LytTR 171-268 ; LytTR 171-268
Cluster members and taxonomy
Representative gene: GCF_003435225#DWY93_RS01165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 241 · GCF_003435225
AssemblyASM343522v1 · Scaffoldhaploid
Genome composition3 514 663 bp · 48,5% GCClostridium sp. AF28-12
Signal transduction countsGenes 67 · HK 31 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key