1 His_kinase#1
364-442 aa · 79 aa · 14.0% of protein
Raw token
His_kinase:364:3.06e-31:442:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY93_RS01160
Histidine kinase, Classic
Clostridium sp. AF28-12 · GCF_003435225
ClassHKTypeClassicLength565 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435225#DWY93_RS01160Stable P2CS identifier used across views.
GenomeGCF_003435225Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length565 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 565 aa (31.9%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa565 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
460-560 aa · 101 aa · 17.9% of protein
Raw token
HATPase_c:460:0.00000058:560:110:109- Raw architecture: His_kinase:364:3.06e-31:442:80:80#HATPase_c:460:0.00000058:560:110:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435225::NZ_QWGJ01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span247212-249932Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY93_01160RefSeq proteinWP_117469124.1
Context group ID
GCF_003435225::NZ_QWGJ01000001.1::G00003Context members
DWY93_RS01160DWY93_RS01165
Partner locus tags
DWY93_RS01160DWY93_RS01165
Partner old locus tags
DWY93_01160DWY93_01165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117469124.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY93_RS01160Primary locus identifier stored in the genes table.
Old locus tagDWY93_01160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval247 212-248 909 nt1 698 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span247 212-249 932 ntGCF_003435225::NZ_QWGJ01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435225::NZ_QWGJ01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span247 212-249 932 nt2 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
247 212 nt249 932 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY93_RS01160GCF_003435225#DWY93_RS01160
HKClassicCurrent focus
247 212-248 909 nt · Forward (+)
DWY93_RS01165GCF_003435225#DWY93_RS01165
RRLytTR
249 117-249 932 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435225#DWY93_RS01160The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1235608
Simplified PFAM architecture for HKOC_1235608
PFAM domain coverage: 342 / 565 aa (60.5%)
1 aa565 aa
5TM-5TMR_LYTHis_kinaseHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + His_kinase + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[29-189] | His_kinase[364-442] | HATPase_c[460-561]
- Domain count: 3
- Matched identifier: HKOC_1235608
- Positioned domains: 5TM-5TMR_LYT 29-189 ; His_kinase 364-442 ; HATPase_c 460-561
Cluster members and taxonomy
Representative gene: GCF_003435225#DWY93_RS01160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 241 · GCF_003435225
AssemblyASM343522v1 · Scaffoldhaploid
Genome composition3 514 663 bp · 48,5% GCClostridium sp. AF28-12
Signal transduction countsGenes 67 · HK 31 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key