1 Response_reg#1
5-114 aa · 110 aa · 45.6% of protein
Raw token
Response_reg:5:5.49e-32:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY93_RS00725
Response regulator OmpR family
Clostridium sp. AF28-12 · GCF_003435225
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435225#DWY93_RS00725Stable P2CS identifier used across views.
GenomeGCF_003435225Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 241 aa (77.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-230 aa · 76 aa · 31.5% of protein
Raw token
Trans_reg_C:155:7.92e-19:230:77:77- Raw architecture: Response_reg:5:5.49e-32:114:111:111#Trans_reg_C:155:7.92e-19:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435225::NZ_QWGJ01000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span155685-156410Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY93_00725RefSeq proteinWP_117469061.1
Context group ID
GCF_003435225::NZ_QWGJ01000001.1::G00002Context members
DWY93_RS00725
Partner locus tags
DWY93_RS00725
Partner old locus tags
DWY93_00725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117469061.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY93_RS00725Primary locus identifier stored in the genes table.
Old locus tagDWY93_00725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval155 685-156 410 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span155 685-156 410 ntGCF_003435225::NZ_QWGJ01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435225::NZ_QWGJ01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span155 685-156 410 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
155 685 nt156 410 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWY93_RS00725GCF_003435225#DWY93_RS00725
RROmpRCurrent focus
155 685-156 410 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435225#DWY93_RS00725The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0867681
Simplified PFAM architecture for RROC_0867681
PFAM domain coverage: 184 / 241 aa (76.3%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[156-230]
- Domain count: 2
- Matched identifier: RROC_0867681
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 156-230 ; Trans_reg_C 156-230
Cluster members and taxonomy
Representative gene: GCF_003435225#DWY93_RS00725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 241 · GCF_003435225
AssemblyASM343522v1 · Scaffoldhaploid
Genome composition3 514 663 bp · 48,5% GCClostridium sp. AF28-12
Signal transduction countsGenes 67 · HK 31 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key