1 Response_reg#1
7-116 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:7:2.39e-31:116:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW677_RS10535
Response regulator OmpR family
Clostridium sp. AM25-23AC · GCF_003435125
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435125#DW677_RS10535Stable P2CS identifier used across views.
GenomeGCF_003435125Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 221 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-220 aa · 70 aa · 31.7% of protein
Raw token
Trans_reg_C:151:3.02e-29:220:73:77- Raw architecture: Response_reg:7:2.39e-31:116:110:111#Trans_reg_C:151:3.02e-29:220:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435125::NZ_QWGI01000015.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span78551-80619Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW677_10545RefSeq proteinWP_015552367.1
Context group ID
GCF_003435125::NZ_QWGI01000015.1::G00015Context members
DW677_RS10530DW677_RS10535
Partner locus tags
DW677_RS10530DW677_RS10535
Partner old locus tags
DW677_10540DW677_10545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015552367.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW677_RS10535Primary locus identifier stored in the genes table.
Old locus tagDW677_10545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGI01000015.1Sequence record reported by the local genomic context database.
Genomic interval79 954-80 619 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span78 551-80 619 ntGCF_003435125::NZ_QWGI01000015.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435125::NZ_QWGI01000015.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGI01000015.1All displayed genes belong to this local TCS context.
Neighborhood span78 551-80 619 nt2 069 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 551 nt80 619 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW677_RS10530GCF_003435125#DW677_RS10530
HKClassic
78 551-79 957 nt · Reverse (-)
DW677_RS10535GCF_003435125#DW677_RS10535
RROmpRCurrent focus
79 954-80 619 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS10535The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1687446
Simplified PFAM architecture for RROC_1687446
PFAM domain coverage: 184 / 221 aa (83.3%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-116] | Trans_reg_C[150-220]
- Domain count: 2
- Matched identifier: RROC_1687446
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; Trans_reg_C 150-220 ; Trans_reg_C 150-220
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS10535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 240 · GCF_003435125
AssemblyASM343512v1 · Scaffoldhaploid
Genome composition3 757 782 bp · 48,0% GCClostridium sp. AM25-23AC
Signal transduction countsGenes 66 · HK 30 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key