1 sCache_like#1
72-129 aa · 58 aa · 12.4% of protein
Raw token
sCache_like:72:0.00000000193:129:58:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW677_RS10530
Histidine kinase, Classic
Clostridium sp. AM25-23AC · GCF_003435125
ClassHKTypeClassicLength468 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435125#DW677_RS10530Stable P2CS identifier used across views.
GenomeGCF_003435125Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length468 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 468 aa (49.6%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa468 aa
Domain-by-domain annotation3 items
2 HisKA#2
223-287 aa · 65 aa · 13.9% of protein
Raw token
HisKA:223:3.49e-18:287:65:643 HATPase_c#3
331-439 aa · 109 aa · 23.3% of protein
Raw token
HATPase_c:331:5.51e-30:439:109:109- Raw architecture: sCache_like:72:0.00000000193:129:58:114#HisKA:223:3.49e-18:287:65:64#HATPase_c:331:5.51e-30:439:109:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435125::NZ_QWGI01000015.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span78551-80619Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW677_10540RefSeq proteinWP_117483443.1
Context group ID
GCF_003435125::NZ_QWGI01000015.1::G00015Context members
DW677_RS10530DW677_RS10535
Partner locus tags
DW677_RS10530DW677_RS10535
Partner old locus tags
DW677_10540DW677_10545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117483443.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW677_RS10530Primary locus identifier stored in the genes table.
Old locus tagDW677_10540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGI01000015.1Sequence record reported by the local genomic context database.
Genomic interval78 551-79 957 nt1 407 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span78 551-80 619 ntGCF_003435125::NZ_QWGI01000015.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435125::NZ_QWGI01000015.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGI01000015.1All displayed genes belong to this local TCS context.
Neighborhood span78 551-80 619 nt2 069 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 551 nt80 619 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW677_RS10530GCF_003435125#DW677_RS10530
HKClassicCurrent focus
78 551-79 957 nt · Reverse (-)
DW677_RS10535GCF_003435125#DW677_RS10535
RROmpR
79 954-80 619 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS10530The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1740163
Simplified PFAM architecture for HKOC_1740163
PFAM domain coverage: 174 / 468 aa (37.2%)
1 aa468 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[223-287] | HATPase_c[332-440]
- Domain count: 2
- Matched identifier: HKOC_1740163
- Positioned domains: HisKA 223-287 ; HATPase_c 332-440
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS10530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 240 · GCF_003435125
AssemblyASM343512v1 · Scaffoldhaploid
Genome composition3 757 782 bp · 48,0% GCClostridium sp. AM25-23AC
Signal transduction countsGenes 66 · HK 30 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key