1 Response_reg#1
4-117 aa · 114 aa · 21.3% of protein
Raw token
Response_reg:4:5.02e-26:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW677_RS10435
Response regulator, unclassified
Clostridium sp. AM25-23AC · GCF_003435125
ClassRRTypeunclassifiedLength535 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435125#DW677_RS10435Stable P2CS identifier used across views.
GenomeGCF_003435125Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length535 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 535 aa (35.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa535 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
441-481 aa · 41 aa · 7.7% of protein
Raw token
HTH_AraC:441:0.0000000521:481:41:423 HTH_AraC#3
496-532 aa · 37 aa · 6.9% of protein
Raw token
HTH_AraC:496:0.0000000256:532:37:42- Raw architecture: Response_reg:4:5.02e-26:117:114:111#HTH_AraC:441:0.0000000521:481:41:42#HTH_AraC:496:0.0000000256:532:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435125::NZ_QWGI01000015.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49806-52489Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW677_10445RefSeq proteinWP_117567148.1
Context group ID
GCF_003435125::NZ_QWGI01000015.1::G00014Context members
DW677_RS10430DW677_RS10435
Partner locus tags
DW677_RS10430DW677_RS10435
Partner old locus tags
DW677_10440DW677_10445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117567148.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW677_RS10435Primary locus identifier stored in the genes table.
Old locus tagDW677_10445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGI01000015.1Sequence record reported by the local genomic context database.
Genomic interval50 882-52 489 nt1 608 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span49 806-52 489 ntGCF_003435125::NZ_QWGI01000015.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435125::NZ_QWGI01000015.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGI01000015.1All displayed genes belong to this local TCS context.
Neighborhood span49 806-52 489 nt2 684 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 806 nt52 489 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW677_RS10430GCF_003435125#DW677_RS10430
HKClassic
49 806-50 885 nt · Reverse (-)
DW677_RS10435GCF_003435125#DW677_RS10435
RRunclassifiedCurrent focus
50 882-52 489 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS10435The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0101043
Simplified PFAM architecture for RROC_0101043
PFAM domain coverage: 192 / 535 aa (35.9%)
1 aa535 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[454-532]
- Domain count: 2
- Matched identifier: RROC_0101043
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 454-532 ; HTH_18 454-532
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS10435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 240 · GCF_003435125
AssemblyASM343512v1 · Scaffoldhaploid
Genome composition3 757 782 bp · 48,0% GCClostridium sp. AM25-23AC
Signal transduction countsGenes 66 · HK 30 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key