1 Response_reg#1
4-111 aa · 108 aa · 31.2% of protein
Raw token
Response_reg:4:2.12e-18:111:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW677_RS10215
Response regulator, unclassified
Clostridium sp. AM25-23AC · GCF_003435125
ClassRRTypeunclassifiedLength346 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435125#DW677_RS10215Stable P2CS identifier used across views.
GenomeGCF_003435125Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length346 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 346 aa (54.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa346 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
239-280 aa · 42 aa · 12.1% of protein
Raw token
HTH_AraC:239:0.0000000256:280:42:423 HTH_AraC#3
292-328 aa · 37 aa · 10.7% of protein
Raw token
HTH_AraC:292:0.0000000359:328:37:42- Raw architecture: Response_reg:4:2.12e-18:111:108:111#HTH_AraC:239:0.0000000256:280:42:42#HTH_AraC:292:0.0000000359:328:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435125::NZ_QWGI01000014.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span97540-99915Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW677_10225RefSeq proteinWP_117469594.1
Context group ID
GCF_003435125::NZ_QWGI01000014.1::G00013Context members
DW677_RS10210DW677_RS10215
Partner locus tags
DW677_RS10210DW677_RS10215
Partner old locus tags
DW677_10220DW677_10225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117469594.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW677_RS10215Primary locus identifier stored in the genes table.
Old locus tagDW677_10225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGI01000014.1Sequence record reported by the local genomic context database.
Genomic interval98 875-99 915 nt1 041 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span97 540-99 915 ntGCF_003435125::NZ_QWGI01000014.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435125::NZ_QWGI01000014.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGI01000014.1All displayed genes belong to this local TCS context.
Neighborhood span97 540-99 915 nt2 376 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
97 540 nt99 915 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW677_RS10210GCF_003435125#DW677_RS10210
HKClassic
97 540-98 871 nt · Forward (+)
DW677_RS10215GCF_003435125#DW677_RS10215
RRunclassifiedCurrent focus
98 875-99 915 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS10215The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0491103
Simplified PFAM architecture for RROC_0491103
PFAM domain coverage: 184 / 346 aa (53.2%)
1 aa346 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-111] | HTH_AraC[239-280] | HTH_AraC[295-328]
- Domain count: 3
- Matched identifier: RROC_0491103
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; HTH_AraC 239-280 ; HTH_AraC 239-280 ; HTH_AraC 295-328 ; HTH_AraC 295-328
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS10215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 240 · GCF_003435125
AssemblyASM343512v1 · Scaffoldhaploid
Genome composition3 757 782 bp · 48,0% GCClostridium sp. AM25-23AC
Signal transduction countsGenes 66 · HK 30 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key