1 Response_reg#1
4-115 aa · 112 aa · 93.3% of protein
Raw token
Response_reg:4:8.18e-36:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW677_RS08130
Response regulator, CheY family
Clostridium sp. AM25-23AC · GCF_003435125
ClassRRTypeCheYLength120 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435125#DW677_RS08130Stable P2CS identifier used across views.
GenomeGCF_003435125Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length120 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 120 aa (93.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa120 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:8.18e-36:115:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435125::NZ_QWGI01000010.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span108324-108686Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW677_08140RefSeq proteinWP_015553136.1
Context group ID
GCF_003435125::NZ_QWGI01000010.1::G00010Context members
DW677_RS08130
Partner locus tags
DW677_RS08130
Partner old locus tags
DW677_08140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015553136.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW677_RS08130Primary locus identifier stored in the genes table.
Old locus tagDW677_08140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGI01000010.1Sequence record reported by the local genomic context database.
Genomic interval108 324-108 686 nt363 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span108 324-108 686 ntGCF_003435125::NZ_QWGI01000010.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435125::NZ_QWGI01000010.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGI01000010.1All displayed genes belong to this local TCS context.
Neighborhood span108 324-108 686 nt363 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 324 nt108 686 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW677_RS08130GCF_003435125#DW677_RS08130
RRCheYCurrent focus
108 324-108 686 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS08130The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2438393
Simplified PFAM architecture for RROC_2438393
PFAM domain coverage: 111 / 120 aa (92.5%)
1 aa120 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-114]
- Domain count: 1
- Matched identifier: RROC_2438393
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS08130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 240 · GCF_003435125
AssemblyASM343512v1 · Scaffoldhaploid
Genome composition3 757 782 bp · 48,0% GCClostridium sp. AM25-23AC
Signal transduction countsGenes 66 · HK 30 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key