1 CheW#1
19-156 aa · 138 aa · 44.2% of protein
Raw token
CheW:19:1.1e-28:156:139:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW677_RS08060
Response regulator CheV family
Clostridium sp. AM25-23AC · GCF_003435125
ClassRRTypeCheVLength312 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435125#DW677_RS08060Stable P2CS identifier used across views.
GenomeGCF_003435125Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length312 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage249 / 312 aa (79.8%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa312 aa
Domain-by-domain annotation2 items
2 Response_reg#2
179-289 aa · 111 aa · 35.6% of protein
Raw token
Response_reg:179:2.49e-20:289:111:111- Raw architecture: CheW:19:1.1e-28:156:139:138#Response_reg:179:2.49e-20:289:111:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435125::NZ_QWGI01000010.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span96776-97714Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW677_08070RefSeq proteinWP_015553150.1
Context group ID
GCF_003435125::NZ_QWGI01000010.1::G00009Context members
DW677_RS08060
Partner locus tags
DW677_RS08060
Partner old locus tags
DW677_08070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015553150.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW677_RS08060Primary locus identifier stored in the genes table.
Old locus tagDW677_08070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGI01000010.1Sequence record reported by the local genomic context database.
Genomic interval96 776-97 714 nt939 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span96 776-97 714 ntGCF_003435125::NZ_QWGI01000010.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435125::NZ_QWGI01000010.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGI01000010.1All displayed genes belong to this local TCS context.
Neighborhood span96 776-97 714 nt939 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 776 nt97 714 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW677_RS08060GCF_003435125#DW677_RS08060
RRCheVCurrent focus
96 776-97 714 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS08060The current gene is the representative for this cluster.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0547572
Simplified PFAM architecture for RROC_0547572
PFAM domain coverage: 247 / 312 aa (79.2%)
1 aa312 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[20-154] | Response_reg[179-290]
- Domain count: 2
- Matched identifier: RROC_0547572
- Positioned domains: CheW 20-154 ; CheW 20-154 ; Response_reg 179-290 ; Response_reg 179-290
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS08060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 240 · GCF_003435125
AssemblyASM343512v1 · Scaffoldhaploid
Genome composition3 757 782 bp · 48,0% GCClostridium sp. AM25-23AC
Signal transduction countsGenes 66 · HK 30 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key