1 Hpt#1
9-75 aa · 67 aa · 9.6% of protein
Raw token
Hpt:9:0.0000000000767:75:67:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW677_RS07925
Histidine kinase, CheA
Clostridium sp. AM25-23AC · GCF_003435125
ClassHKTypeCheALength700 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435125#DW677_RS07925Stable P2CS identifier used across views.
GenomeGCF_003435125Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length700 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage405 / 700 aa (57.9%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa700 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
307-369 aa · 63 aa · 9.0% of protein
Raw token
H-kinase_dim:307:0.00000000000000452:369:65:673 HATPase_c#3
414-556 aa · 143 aa · 20.4% of protein
Raw token
HATPase_c:414:5.2e-17:556:143:1094 CheW#4
561-692 aa · 132 aa · 18.9% of protein
Raw token
CheW:561:3.84e-17:692:136:138- Raw architecture: Hpt:9:0.0000000000767:75:67:84#H-kinase_dim:307:0.00000000000000452:369:65:67#HATPase_c:414:5.2e-17:556:143:109#CheW:561:3.84e-17:692:136:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435125::NZ_QWGI01000010.1::G00007
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span70013-72115Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW677_07935RefSeq proteinWP_117566841.1
Context group ID
GCF_003435125::NZ_QWGI01000010.1::G00007Context members
DW677_RS07925
Partner locus tags
DW677_RS07925
Partner old locus tags
DW677_07935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117566841.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW677_RS07925Primary locus identifier stored in the genes table.
Old locus tagDW677_07935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGI01000010.1Sequence record reported by the local genomic context database.
Genomic interval70 013-72 115 nt2 103 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span70 013-72 115 ntGCF_003435125::NZ_QWGI01000010.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435125::NZ_QWGI01000010.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGI01000010.1All displayed genes belong to this local TCS context.
Neighborhood span70 013-72 115 nt2 103 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 013 nt72 115 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW677_RS07925GCF_003435125#DW677_RS07925
HKCheACurrent focus
70 013-72 115 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS07925The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0769576
Simplified PFAM architecture for HKOC_0769576
PFAM domain coverage: 496 / 700 aa (70.9%)
1 aa700 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[9-88] | P2[178-256] | H-kinase_dim[305-368] | HATPase_c[416-556] | CheW[562-693]
- Domain count: 5
- Matched identifier: HKOC_0769576
- Positioned domains: Hpt 9-88 ; P2 178-256 ; H-kinase_dim 305-368 ; HATPase_c 416-556 ; CheW 562-693
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS07925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 240 · GCF_003435125
AssemblyASM343512v1 · Scaffoldhaploid
Genome composition3 757 782 bp · 48,0% GCClostridium sp. AM25-23AC
Signal transduction countsGenes 66 · HK 30 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key