1 His_kinase#1
364-442 aa · 79 aa · 14.0% of protein
Raw token
His_kinase:364:2.76e-32:442:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW677_RS07690
Histidine kinase, Classic
Clostridium sp. AM25-23AC · GCF_003435125
ClassHKTypeClassicLength565 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435125#DW677_RS07690Stable P2CS identifier used across views.
GenomeGCF_003435125Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length565 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 565 aa (31.9%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa565 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
460-560 aa · 101 aa · 17.9% of protein
Raw token
HATPase_c:460:0.000000256:560:110:109- Raw architecture: His_kinase:364:2.76e-32:442:80:80#HATPase_c:460:0.000000256:560:110:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435125::NZ_QWGI01000010.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13646-16366Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW677_07700RefSeq proteinWP_117566808.1
Context group ID
GCF_003435125::NZ_QWGI01000010.1::G00006Context members
DW677_RS07685DW677_RS07690
Partner locus tags
DW677_RS07685DW677_RS07690
Partner old locus tags
DW677_07695DW677_07700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117566808.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW677_RS07690Primary locus identifier stored in the genes table.
Old locus tagDW677_07700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGI01000010.1Sequence record reported by the local genomic context database.
Genomic interval14 669-16 366 nt1 698 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 646-16 366 ntGCF_003435125::NZ_QWGI01000010.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435125::NZ_QWGI01000010.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGI01000010.1All displayed genes belong to this local TCS context.
Neighborhood span13 646-16 366 nt2 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 646 nt16 366 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW677_RS07685GCF_003435125#DW677_RS07685
RRLytTR
13 646-14 461 nt · Reverse (-)
DW677_RS07690GCF_003435125#DW677_RS07690
HKClassicCurrent focus
14 669-16 366 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS07690The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1235607
Simplified PFAM architecture for HKOC_1235607
PFAM domain coverage: 342 / 565 aa (60.5%)
1 aa565 aa
5TM-5TMR_LYTHis_kinaseHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + His_kinase + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[29-189] | His_kinase[364-442] | HATPase_c[460-561]
- Domain count: 3
- Matched identifier: HKOC_1235607
- Positioned domains: 5TM-5TMR_LYT 29-189 ; His_kinase 364-442 ; HATPase_c 460-561
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS07690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 240 · GCF_003435125
AssemblyASM343512v1 · Scaffoldhaploid
Genome composition3 757 782 bp · 48,0% GCClostridium sp. AM25-23AC
Signal transduction countsGenes 66 · HK 30 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key