1 HAMP#1
185-252 aa · 68 aa · 14.1% of protein
Raw token
HAMP:185:0.00000000428:252:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW677_RS05480
Histidine kinase, Classic
Clostridium sp. AM25-23AC · GCF_003435125
ClassHKTypeClassicLength481 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435125#DW677_RS05480Stable P2CS identifier used across views.
GenomeGCF_003435125Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length481 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 481 aa (47.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa481 aa
Domain-by-domain annotation3 items
2 HisKA#2
262-321 aa · 60 aa · 12.5% of protein
Raw token
HisKA:262:0.0000000000000189:321:60:643 HATPase_c#3
368-467 aa · 100 aa · 20.8% of protein
Raw token
HATPase_c:368:6.11e-27:467:105:109- Raw architecture: HAMP:185:0.00000000428:252:68:69#HisKA:262:0.0000000000000189:321:60:64#HATPase_c:368:6.11e-27:467:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435125::NZ_QWGI01000006.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span89575-91721Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW677_05480RefSeq proteinWP_165859942.1
Context group ID
GCF_003435125::NZ_QWGI01000006.1::G00031Context members
DW677_RS05475DW677_RS05480
Partner locus tags
DW677_RS05475DW677_RS05480
Partner old locus tags
DW677_05475DW677_05480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_165859942.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW677_RS05480Primary locus identifier stored in the genes table.
Old locus tagDW677_05480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGI01000006.1Sequence record reported by the local genomic context database.
Genomic interval90 276-91 721 nt1 446 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span89 575-91 721 ntGCF_003435125::NZ_QWGI01000006.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435125::NZ_QWGI01000006.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGI01000006.1All displayed genes belong to this local TCS context.
Neighborhood span89 575-91 721 nt2 147 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
89 575 nt91 721 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW677_RS05475GCF_003435125#DW677_RS05475
RROmpR
89 575-90 279 nt · Forward (+)
DW677_RS05480GCF_003435125#DW677_RS05480
HKClassicCurrent focus
90 276-91 721 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS05480The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1613135
Simplified PFAM architecture for HKOC_1613135
PFAM domain coverage: 163 / 481 aa (33.9%)
1 aa481 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[260-321] | HATPase_c[368-468]
- Domain count: 2
- Matched identifier: HKOC_1613135
- Positioned domains: HisKA 260-321 ; HATPase_c 368-468
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS05480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 240 · GCF_003435125
AssemblyASM343512v1 · Scaffoldhaploid
Genome composition3 757 782 bp · 48,0% GCClostridium sp. AM25-23AC
Signal transduction countsGenes 66 · HK 30 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key