1 Response_reg#1
37-118 aa · 82 aa · 33.1% of protein
Raw token
Response_reg:37:1.71e-19:118:84:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW677_RS03275
Response regulator LytTR family
Clostridium sp. AM25-23AC · GCF_003435125
ClassRRTypeLytTRLength248 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435125#DW677_RS03275Stable P2CS identifier used across views.
GenomeGCF_003435125Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 248 aa (69.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa248 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-230 aa · 90 aa · 36.3% of protein
Raw token
LytTR:141:0.00000105:230:95:98- Raw architecture: Response_reg:37:1.71e-19:118:84:111#LytTR:141:0.00000105:230:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435125::NZ_QWGI01000003.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span201208-201954Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW677_03275RefSeq proteinWP_015554680.1
Context group ID
GCF_003435125::NZ_QWGI01000003.1::G00025Context members
DW677_RS03275
Partner locus tags
DW677_RS03275
Partner old locus tags
DW677_03275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015554680.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW677_RS03275Primary locus identifier stored in the genes table.
Old locus tagDW677_03275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGI01000003.1Sequence record reported by the local genomic context database.
Genomic interval201 208-201 954 nt747 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span201 208-201 954 ntGCF_003435125::NZ_QWGI01000003.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435125::NZ_QWGI01000003.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGI01000003.1All displayed genes belong to this local TCS context.
Neighborhood span201 208-201 954 nt747 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
201 208 nt201 954 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW677_RS03275GCF_003435125#DW677_RS03275
RRLytTRCurrent focus
201 208-201 954 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS03275The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0746231
Simplified PFAM architecture for RROC_0746231
PFAM domain coverage: 205 / 248 aa (82.7%)
1 aa248 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-117] | LytTR[141-230]
- Domain count: 2
- Matched identifier: RROC_0746231
- Positioned domains: Response_reg 3-117 ; Response_reg 3-117 ; LytTR 141-230 ; LytTR 141-230
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS03275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 240 · GCF_003435125
AssemblyASM343512v1 · Scaffoldhaploid
Genome composition3 757 782 bp · 48,0% GCClostridium sp. AM25-23AC
Signal transduction countsGenes 66 · HK 30 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key