1 HAMP#1
232-299 aa · 68 aa · 12.9% of protein
Raw token
HAMP:232:0.0000000000000105:299:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW677_RS01900
Histidine kinase, Classic
Clostridium sp. AM25-23AC · GCF_003435125
ClassHKTypeClassicLength527 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435125#DW677_RS01900Stable P2CS identifier used across views.
GenomeGCF_003435125Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length527 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 527 aa (47.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa527 aa
Domain-by-domain annotation3 items
2 His_kinase#2
316-394 aa · 79 aa · 15.0% of protein
Raw token
His_kinase:316:1.62e-28:394:80:803 HATPase_c#3
411-513 aa · 103 aa · 19.5% of protein
Raw token
HATPase_c:411:6.14e-17:513:108:109- Raw architecture: HAMP:232:0.0000000000000105:299:68:69#His_kinase:316:1.62e-28:394:80:80#HATPase_c:411:6.14e-17:513:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435125::NZ_QWGI01000002.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span147279-149751Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW677_01900RefSeq proteinWP_242992093.1
Context group ID
GCF_003435125::NZ_QWGI01000002.1::G00020Context members
DW677_RS01900DW677_RS01905
Partner locus tags
DW677_RS01900DW677_RS01905
Partner old locus tags
DW677_01900DW677_01905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242992093.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW677_RS01900Primary locus identifier stored in the genes table.
Old locus tagDW677_01900Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGI01000002.1Sequence record reported by the local genomic context database.
Genomic interval147 279-148 862 nt1 584 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span147 279-149 751 ntGCF_003435125::NZ_QWGI01000002.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435125::NZ_QWGI01000002.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGI01000002.1All displayed genes belong to this local TCS context.
Neighborhood span147 279-149 751 nt2 473 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
147 279 nt149 751 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW677_RS01900GCF_003435125#DW677_RS01900
HKClassicCurrent focus
147 279-148 862 nt · Forward (+)
DW677_RS01905GCF_003435125#DW677_RS01905
RRunclassified
148 903-149 751 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032490495#ABCW45_RS15665Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1191142
Simplified PFAM architecture for HKOC_1191142
PFAM domain coverage: 230 / 575 aa (40.0%)
1 aa575 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[299-347] | His_kinase[365-442] | HATPase_c[459-561]
- Domain count: 3
- Matched identifier: HKOC_1191142
- Positioned domains: HAMP 299-347 ; His_kinase 365-442 ; HATPase_c 459-561
Cluster members and taxonomy
Representative gene: GCF_032490495#ABCW45_RS15665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 240 · GCF_003435125
AssemblyASM343512v1 · Scaffoldhaploid
Genome composition3 757 782 bp · 48,0% GCClostridium sp. AM25-23AC
Signal transduction countsGenes 66 · HK 30 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key