1 Response_reg#1
3-109 aa · 107 aa · 44.2% of protein
Raw token
Response_reg:3:1.19e-19:109:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW677_RS01185
Response regulator LytTR family
Clostridium sp. AM25-23AC · GCF_003435125
ClassRRTypeLytTRLength242 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435125#DW677_RS01185Stable P2CS identifier used across views.
GenomeGCF_003435125Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 242 aa (80.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-229 aa · 87 aa · 36.0% of protein
Raw token
LytTR:143:0.00000000000101:229:92:98- Raw architecture: Response_reg:3:1.19e-19:109:109:111#LytTR:143:0.00000000000101:229:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435125::NZ_QWGI01000001.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span265531-266259Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW677_01185RefSeq proteinWP_165860023.1
Context group ID
GCF_003435125::NZ_QWGI01000001.1::G00005Context members
DW677_RS01185
Partner locus tags
DW677_RS01185
Partner old locus tags
DW677_01185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_165860023.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW677_RS01185Primary locus identifier stored in the genes table.
Old locus tagDW677_01185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGI01000001.1Sequence record reported by the local genomic context database.
Genomic interval265 531-266 259 nt729 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span265 531-266 259 ntGCF_003435125::NZ_QWGI01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435125::NZ_QWGI01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span265 531-266 259 nt729 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
265 531 nt266 259 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW677_RS01185GCF_003435125#DW677_RS01185
RRLytTRCurrent focus
265 531-266 259 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS01185The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0848476
Simplified PFAM architecture for RROC_0848476
PFAM domain coverage: 193 / 242 aa (79.8%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-109] | LytTR[143-229]
- Domain count: 2
- Matched identifier: RROC_0848476
- Positioned domains: Response_reg 4-109 ; Response_reg 4-109 ; LytTR 143-229 ; LytTR 143-229
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS01185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 240 · GCF_003435125
AssemblyASM343512v1 · Scaffoldhaploid
Genome composition3 757 782 bp · 48,0% GCClostridium sp. AM25-23AC
Signal transduction countsGenes 66 · HK 30 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key