1 GGDEF#1
263-410 aa · 148 aa · 13.3% of protein
Raw token
GGDEF:263:3.19e-19:410:157:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW747_RS11540
Histidine kinase, Hybrid
Coprococcus catus · GCF_003434235
ClassHKTypeHybridLength1112 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003434235#DW747_RS11540Stable P2CS identifier used across views.
GenomeGCF_003434235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
GGDEFHisKAHATPase_cResponse_reg
Protein length1112 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage449 / 1112 aa (40.4%)Merged over positioned domains only.
Domain description1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1112 aa
Domain-by-domain annotation4 items
2 HisKA#2
737-803 aa · 67 aa · 6.0% of protein
Raw token
HisKA:737:0.00000000000000468:803:67:643 HATPase_c#3
852-969 aa · 118 aa · 10.6% of protein
Raw token
HATPase_c:852:2.63e-27:969:118:1094 Response_reg#4
991-1106 aa · 116 aa · 10.4% of protein
Raw token
Response_reg:991:2.66e-26:1106:116:111- Raw architecture: GGDEF:263:3.19e-19:410:157:160#HisKA:737:0.00000000000000468:803:67:64#HATPase_c:852:2.63e-27:969:118:109#Response_reg:991:2.66e-26:1106:116:111
- Domain description: 1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003434235::NZ_QVFD01000011.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span87840-91178Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW747_11545RefSeq proteinWP_117540773.1
Context group ID
GCF_003434235::NZ_QVFD01000011.1::G00020Context members
DW747_RS11540
Partner locus tags
DW747_RS11540
Partner old locus tags
DW747_11545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117540773.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2XK58Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2XK58_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW747_RS11540Primary locus identifier stored in the genes table.
Old locus tagDW747_11545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFD01000011.1Sequence record reported by the local genomic context database.
Genomic interval87 840-91 178 nt3 339 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span87 840-91 178 ntGCF_003434235::NZ_QVFD01000011.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434235::NZ_QVFD01000011.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFD01000011.1All displayed genes belong to this local TCS context.
Neighborhood span87 840-91 178 nt3 339 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 840 nt91 178 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW747_RS11540GCF_003434235#DW747_RS11540
HKHybridCurrent focus
87 840-91 178 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434235#DW747_RS11540The current gene is the representative for this cluster.
PFAM architecturePAP2 + GGDEF + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0225680
Simplified PFAM architecture for HKOC_0225680
PFAM domain coverage: 489 / 1112 aa (44.0%)
1 aa1112 aa
PAP2GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: PAP2 + GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: PAP2[10-52] | GGDEF[264-411] | HisKA[737-803] | HATPase_c[854-968] | Response_reg[991-1106]
- Domain count: 5
- Matched identifier: HKOC_0225680
- Positioned domains: PAP2 10-52 ; GGDEF 264-411 ; HisKA 737-803 ; HATPase_c 854-968 ; Response_reg 991-1106
Cluster members and taxonomy
Representative gene: GCF_003434235#DW747_RS11540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 116 085 · GCF_003434235
AssemblyASM343423v1 · Scaffoldhaploid
Genome composition3 417 494 bp · 43,5% GCCoprococcus catus
Signal transduction countsGenes 82 · HK 41 · RR 39CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key