1 HisKA#1
345-411 aa · 67 aa · 9.3% of protein
Raw token
HisKA:345:7.17e-17:411:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW747_RS01310
Histidine kinase, Hybrid
Coprococcus catus · GCF_003434235
ClassHKTypeHybridLength724 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003434235#DW747_RS01310Stable P2CS identifier used across views.
GenomeGCF_003434235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length724 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage298 / 724 aa (41.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa724 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
463-576 aa · 114 aa · 15.7% of protein
Raw token
HATPase_c:463:6.08e-26:576:114:1093 Response_reg#3
599-715 aa · 117 aa · 16.2% of protein
Raw token
Response_reg:599:1.98e-28:715:117:111- Raw architecture: HisKA:345:7.17e-17:411:67:64#HATPase_c:463:6.08e-26:576:114:109#Response_reg:599:1.98e-28:715:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003434235::NZ_QVFD01000001.1::G00002
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span298649-305590Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW747_01310RefSeq proteinWP_117538687.1
Context group ID
GCF_003434235::NZ_QVFD01000001.1::G00002Context members
DW747_RS01300DW747_RS01305DW747_RS01310
Partner locus tags
DW747_RS01300DW747_RS01305DW747_RS01310
Partner old locus tags
DW747_01300DW747_01305DW747_01310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117538687.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2XR96Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2XR96_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW747_RS01310Primary locus identifier stored in the genes table.
Old locus tagDW747_01310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFD01000001.1Sequence record reported by the local genomic context database.
Genomic interval303 416-305 590 nt2 175 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span298 649-305 590 ntGCF_003434235::NZ_QVFD01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434235::NZ_QVFD01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span298 649-305 590 nt6 942 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
298 649 nt305 590 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DW747_RS01300GCF_003434235#DW747_RS01300
RRRpfG
298 649-300 148 nt · Reverse (-)
DW747_RS01305GCF_003434235#DW747_RS01305
HKHybrid
300 198-303 077 nt · Reverse (-)
DW747_RS01310GCF_003434235#DW747_RS01310
HKHybridCurrent focus
303 416-305 590 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434235#DW747_RS01310The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0725018
Simplified PFAM architecture for HKOC_0725018
PFAM domain coverage: 296 / 724 aa (40.9%)
1 aa724 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[345-411] | HATPase_c[463-575] | Response_reg[599-714]
- Domain count: 3
- Matched identifier: HKOC_0725018
- Positioned domains: HisKA 345-411 ; HATPase_c 463-575 ; Response_reg 599-714
Cluster members and taxonomy
Representative gene: GCF_003434235#DW747_RS01310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 116 085 · GCF_003434235
AssemblyASM343423v1 · Scaffoldhaploid
Genome composition3 417 494 bp · 43,5% GCCoprococcus catus
Signal transduction countsGenes 82 · HK 41 · RR 39CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key