1 Response_reg#1
89-206 aa · 118 aa · 56.2% of protein
Raw token
Response_reg:89:5.03e-35:206:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW747_RS01445
Response regulator, unclassified
Coprococcus catus · GCF_003434235
ClassRRTypeunclassifiedLength210 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003434235#DW747_RS01445Stable P2CS identifier used across views.
GenomeGCF_003434235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage118 / 210 aa (56.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:89:5.03e-35:206:118:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003434235::NZ_QVFD01000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span341857-345711Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW747_01445RefSeq proteinWP_117538822.1
Context group ID
GCF_003434235::NZ_QVFD01000001.1::G00006Context members
DW747_RS01445DW747_RS01450
Partner locus tags
DW747_RS01445DW747_RS01450
Partner old locus tags
DW747_01445DW747_01450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117538822.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2XRS2Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2XRS2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW747_RS01445Primary locus identifier stored in the genes table.
Old locus tagDW747_01445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFD01000001.1Sequence record reported by the local genomic context database.
Genomic interval341 857-342 489 nt633 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span341 857-345 711 ntGCF_003434235::NZ_QVFD01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434235::NZ_QVFD01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span341 857-345 711 nt3 855 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
341 857 nt345 711 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW747_RS01445GCF_003434235#DW747_RS01445
RRunclassifiedCurrent focus
341 857-342 489 nt · Reverse (-)
DW747_RS01450GCF_003434235#DW747_RS01450
HKHybrid
342 502-345 711 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS15130Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2019258
Simplified PFAM architecture for RROC_2019258
PFAM domain coverage: 176 / 210 aa (83.8%)
1 aa210 aa
HATPase_cResponse_reg
- Simplified architecture: HATPase_c + Response_reg
- Raw architecture: HATPase_c[7-65] | Response_reg[89-205]
- Domain count: 2
- Matched identifier: RROC_2019258
- Positioned domains: HATPase_c 7-65 ; HATPase_c 7-65 ; Response_reg 89-205 ; Response_reg 89-205
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS15130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 116 085 · GCF_003434235
AssemblyASM343423v1 · Scaffoldhaploid
Genome composition3 417 494 bp · 43,5% GCCoprococcus catus
Signal transduction countsGenes 82 · HK 41 · RR 39CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key