1 sCache_like#1
62-131 aa · 70 aa · 15.7% of protein
Raw token
sCache_like:62:0.00000000026:131:70:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW747_RS06755
Histidine kinase, Classic
Coprococcus catus · GCF_003434235
ClassHKTypeClassicLength446 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003434235#DW747_RS06755Stable P2CS identifier used across views.
GenomeGCF_003434235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length446 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 446 aa (54.0%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa446 aa
Domain-by-domain annotation3 items
2 HisKA#2
224-289 aa · 66 aa · 14.8% of protein
Raw token
HisKA:224:3.71e-16:289:66:643 HATPase_c#3
341-445 aa · 105 aa · 23.5% of protein
Raw token
HATPase_c:341:7.6e-30:445:105:109- Raw architecture: sCache_like:62:0.00000000026:131:70:114#HisKA:224:3.71e-16:289:66:64#HATPase_c:341:7.6e-30:445:105:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003434235::NZ_QVFD01000005.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13530-15560Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW747_06755RefSeq proteinWP_242993872.1
Context group ID
GCF_003434235::NZ_QVFD01000005.1::G00042Context members
DW747_RS06755DW747_RS06760
Partner locus tags
DW747_RS06755DW747_RS06760
Partner old locus tags
DW747_06755DW747_06760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242993872.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW747_RS06755Primary locus identifier stored in the genes table.
Old locus tagDW747_06755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFD01000005.1Sequence record reported by the local genomic context database.
Genomic interval13 530-14 870 nt1 341 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 530-15 560 ntGCF_003434235::NZ_QVFD01000005.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434235::NZ_QVFD01000005.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFD01000005.1All displayed genes belong to this local TCS context.
Neighborhood span13 530-15 560 nt2 031 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 530 nt15 560 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW747_RS06755GCF_003434235#DW747_RS06755
HKClassicCurrent focus
13 530-14 870 nt · Reverse (-)
DW747_RS06760GCF_003434235#DW747_RS06760
RROmpR
14 877-15 560 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434235#DW747_RS06755The current gene is the representative for this cluster.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2013367
Simplified PFAM architecture for HKOC_2013367
PFAM domain coverage: 247 / 446 aa (55.4%)
1 aa446 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[60-135] | HisKA[224-289] | HATPase_c[340-444]
- Domain count: 3
- Matched identifier: HKOC_2013367
- Positioned domains: sCache_like 60-135 ; HisKA 224-289 ; HATPase_c 340-444
Cluster members and taxonomy
Representative gene: GCF_003434235#DW747_RS06755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 116 085 · GCF_003434235
AssemblyASM343423v1 · Scaffoldhaploid
Genome composition3 417 494 bp · 43,5% GCCoprococcus catus
Signal transduction countsGenes 82 · HK 41 · RR 39CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key