1 HAMP#1
215-284 aa · 70 aa · 12.9% of protein
Raw token
HAMP:215:0.00000000000515:284:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW747_RS05970
Histidine kinase, Classic
Coprococcus catus · GCF_003434235
ClassHKTypeClassicLength541 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003434235#DW747_RS05970Stable P2CS identifier used across views.
GenomeGCF_003434235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length541 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 541 aa (44.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa541 aa
Domain-by-domain annotation3 items
2 HisKA#2
309-376 aa · 68 aa · 12.6% of protein
Raw token
HisKA:309:0.00000000000000442:376:68:643 HATPase_c#3
427-529 aa · 103 aa · 19.0% of protein
Raw token
HATPase_c:427:8.18e-20:529:104:109- Raw architecture: HAMP:215:0.00000000000515:284:70:69#HisKA:309:0.00000000000000442:376:68:64#HATPase_c:427:8.18e-20:529:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003434235::NZ_QVFD01000004.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80426-82743Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW747_05970RefSeq proteinWP_117539458.1
Context group ID
GCF_003434235::NZ_QVFD01000004.1::G00040Context members
DW747_RS05965DW747_RS05970
Partner locus tags
DW747_RS05965DW747_RS05970
Partner old locus tags
DW747_05965DW747_05970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117539458.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2XMW3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2XMW3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW747_RS05970Primary locus identifier stored in the genes table.
Old locus tagDW747_05970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFD01000004.1Sequence record reported by the local genomic context database.
Genomic interval81 118-82 743 nt1 626 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span80 426-82 743 ntGCF_003434235::NZ_QVFD01000004.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434235::NZ_QVFD01000004.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFD01000004.1All displayed genes belong to this local TCS context.
Neighborhood span80 426-82 743 nt2 318 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 426 nt82 743 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW747_RS05965GCF_003434235#DW747_RS05965
RROmpR
80 426-81 106 nt · Forward (+)
DW747_RS05970GCF_003434235#DW747_RS05970
HKClassicCurrent focus
81 118-82 743 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434235#DW747_RS05970The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1318112
Simplified PFAM architecture for HKOC_1318112
PFAM domain coverage: 222 / 541 aa (41.0%)
1 aa541 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[232-284] | HisKA[309-374] | HATPase_c[428-530]
- Domain count: 3
- Matched identifier: HKOC_1318112
- Positioned domains: HAMP 232-284 ; HisKA 309-374 ; HATPase_c 428-530
Cluster members and taxonomy
Representative gene: GCF_003434235#DW747_RS05970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 116 085 · GCF_003434235
AssemblyASM343423v1 · Scaffoldhaploid
Genome composition3 417 494 bp · 43,5% GCCoprococcus catus
Signal transduction countsGenes 82 · HK 41 · RR 39CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key