1 HisKA#1
46-112 aa · 67 aa · 15.7% of protein
Raw token
HisKA:46:0.000000000000277:112:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW747_RS01965
Histidine kinase, Hybrid
Coprococcus catus · GCF_003434235
ClassHKTypeHybridLength426 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003434235#DW747_RS01965Stable P2CS identifier used across views.
GenomeGCF_003434235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length426 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage301 / 426 aa (70.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa426 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
159-276 aa · 118 aa · 27.7% of protein
Raw token
HATPase_c:159:1.97e-30:276:118:1093 Response_reg#3
301-416 aa · 116 aa · 27.2% of protein
Raw token
Response_reg:301:9.38e-28:416:116:111- Raw architecture: HisKA:46:0.000000000000277:112:67:64#HATPase_c:159:1.97e-30:276:118:109#Response_reg:301:9.38e-28:416:116:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003434235::NZ_QVFD01000001.1::G00012
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span439816-441096Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW747_01965RefSeq proteinWP_207659624.1
Context group ID
GCF_003434235::NZ_QVFD01000001.1::G00012Context members
DW747_RS01965
Partner locus tags
DW747_RS01965
Partner old locus tags
DW747_01965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_207659624.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW747_RS01965Primary locus identifier stored in the genes table.
Old locus tagDW747_01965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFD01000001.1Sequence record reported by the local genomic context database.
Genomic interval439 816-441 096 nt1 281 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span439 816-441 096 ntGCF_003434235::NZ_QVFD01000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434235::NZ_QVFD01000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span439 816-441 096 nt1 281 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
439 816 nt441 096 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW747_RS01965GCF_003434235#DW747_RS01965
HKHybridCurrent focus
439 816-441 096 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434235#DW747_RS01965The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2209467
Simplified PFAM architecture for HKOC_2209467
PFAM domain coverage: 299 / 426 aa (70.2%)
1 aa426 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[46-112] | HATPase_c[160-275] | Response_reg[301-416]
- Domain count: 3
- Matched identifier: HKOC_2209467
- Positioned domains: HisKA 46-112 ; HATPase_c 160-275 ; Response_reg 301-416
Cluster members and taxonomy
Representative gene: GCF_003434235#DW747_RS01965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 116 085 · GCF_003434235
AssemblyASM343423v1 · Scaffoldhaploid
Genome composition3 417 494 bp · 43,5% GCCoprococcus catus
Signal transduction countsGenes 82 · HK 41 · RR 39CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key