1 HisKA#1
269-334 aa · 66 aa · 10.2% of protein
Raw token
HisKA:269:0.00000000000000108:334:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW747_RS01340
Histidine kinase, Hybrid
Coprococcus catus · GCF_003434235
ClassHKTypeHybridLength644 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003434235#DW747_RS01340Stable P2CS identifier used across views.
GenomeGCF_003434235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length644 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage298 / 644 aa (46.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa644 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
381-498 aa · 118 aa · 18.3% of protein
Raw token
HATPase_c:381:2.96e-27:498:118:1093 Response_reg#3
521-634 aa · 114 aa · 17.7% of protein
Raw token
Response_reg:521:1.57e-28:634:114:111- Raw architecture: HisKA:269:0.00000000000000108:334:66:64#HATPase_c:381:2.96e-27:498:118:109#Response_reg:521:1.57e-28:634:114:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003434235::NZ_QVFD01000001.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span311410-313344Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW747_01340RefSeq proteinWP_242991735.1
Context group ID
GCF_003434235::NZ_QVFD01000001.1::G00004Context members
DW747_RS01340
Partner locus tags
DW747_RS01340
Partner old locus tags
DW747_01340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242991735.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW747_RS01340Primary locus identifier stored in the genes table.
Old locus tagDW747_01340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFD01000001.1Sequence record reported by the local genomic context database.
Genomic interval311 410-313 344 nt1 935 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span311 410-313 344 ntGCF_003434235::NZ_QVFD01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434235::NZ_QVFD01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span311 410-313 344 nt1 935 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
311 410 nt313 344 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW747_RS01340GCF_003434235#DW747_RS01340
HKHybridCurrent focus
311 410-313 344 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434235#DW747_RS01340The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0911412
Simplified PFAM architecture for HKOC_0911412
PFAM domain coverage: 298 / 644 aa (46.3%)
1 aa644 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[269-334] | HATPase_c[382-498] | Response_reg[521-635]
- Domain count: 3
- Matched identifier: HKOC_0911412
- Positioned domains: HisKA 269-334 ; HATPase_c 382-498 ; Response_reg 521-635
Cluster members and taxonomy
Representative gene: GCF_003434235#DW747_RS01340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 116 085 · GCF_003434235
AssemblyASM343423v1 · Scaffoldhaploid
Genome composition3 417 494 bp · 43,5% GCCoprococcus catus
Signal transduction countsGenes 82 · HK 41 · RR 39CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key