1 Response_reg#1
17-117 aa · 101 aa · 40.1% of protein
Raw token
Response_reg:17:0.00000000731:117:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW905_RS05575
Response regulator Spo0A family
Faecalibacterium prausnitzii · GCF_003434125
ClassRRTypeSpo0ALength252 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003434125#DW905_RS05575Stable P2CS identifier used across views.
GenomeGCF_003434125Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length252 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage205 / 252 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa252 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
140-243 aa · 104 aa · 41.3% of protein
Raw token
Spo0A_C:140:3.6e-69:243:104:104- Raw architecture: Response_reg:17:0.00000000731:117:103:111#Spo0A_C:140:3.6e-69:243:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003434125::NZ_QVEZ01000002.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span346350-347108Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW905_05565RefSeq proteinWP_117476226.1
Context group ID
GCF_003434125::NZ_QVEZ01000002.1::G00011Context members
DW905_RS05575
Partner locus tags
DW905_RS05575
Partner old locus tags
DW905_05565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117476226.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2V9B8Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2V9B8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed9 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW905_RS05575Primary locus identifier stored in the genes table.
Old locus tagDW905_05565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVEZ01000002.1Sequence record reported by the local genomic context database.
Genomic interval346 350-347 108 nt759 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span346 350-347 108 ntGCF_003434125::NZ_QVEZ01000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434125::NZ_QVEZ01000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVEZ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span346 350-347 108 nt759 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
346 350 nt347 108 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW905_RS05575GCF_003434125#DW905_RS05575
RRSpo0ACurrent focus
346 350-347 108 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434125#DW905_RS05575The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0705505
Simplified PFAM architecture for RROC_0705505
PFAM domain coverage: 209 / 252 aa (82.9%)
1 aa252 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[13-117] | Spo0A_C[140-243]
- Domain count: 2
- Matched identifier: RROC_0705505
- Positioned domains: Response_reg 13-117 ; Response_reg 13-117 ; Spo0A_C 140-243 ; Spo0A_C 140-243
Cluster members and taxonomy
Representative gene: GCF_003434125#DW905_RS05575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003434125
AssemblyASM343412v1 · Scaffoldhaploid
Genome composition2 969 799 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 39 · HK 17 · RR 21CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key