1 sCache_like#1
72-129 aa · 58 aa · 12.9% of protein
Raw token
sCache_like:72:0.000011:129:58:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW905_RS04635
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003434125
ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003434125#DW905_RS04635Stable P2CS identifier used across views.
GenomeGCF_003434125Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length449 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage234 / 449 aa (52.1%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa449 aa
Domain-by-domain annotation3 items
2 HisKA#2
223-288 aa · 66 aa · 14.7% of protein
Raw token
HisKA:223:2.39e-18:288:66:643 HATPase_c#3
336-445 aa · 110 aa · 24.5% of protein
Raw token
HATPase_c:336:5.49e-29:445:110:109- Raw architecture: sCache_like:72:0.000011:129:58:114#HisKA:223:2.39e-18:288:66:64#HATPase_c:336:5.49e-29:445:110:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003434125::NZ_QVEZ01000002.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span180620-182655Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW905_04630RefSeq proteinWP_117535308.1
Context group ID
GCF_003434125::NZ_QVEZ01000002.1::G00010Context members
DW905_RS04635DW905_RS04640
Partner locus tags
DW905_RS04635DW905_RS04640
Partner old locus tags
DW905_04630DW905_04635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117535308.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2V7R8Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2V7R8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW905_RS04635Primary locus identifier stored in the genes table.
Old locus tagDW905_04630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVEZ01000002.1Sequence record reported by the local genomic context database.
Genomic interval180 620-181 969 nt1 350 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span180 620-182 655 ntGCF_003434125::NZ_QVEZ01000002.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434125::NZ_QVEZ01000002.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVEZ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span180 620-182 655 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
180 620 nt182 655 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW905_RS04635GCF_003434125#DW905_RS04635
HKClassicCurrent focus
180 620-181 969 nt · Reverse (-)
DW905_RS04640GCF_003434125#DW905_RS04640
RROmpR
181 966-182 655 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434125#DW905_RS04635The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1977123
Simplified PFAM architecture for HKOC_1977123
PFAM domain coverage: 177 / 449 aa (39.4%)
1 aa449 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[223-288] | HATPase_c[336-446]
- Domain count: 2
- Matched identifier: HKOC_1977123
- Positioned domains: HisKA 223-288 ; HATPase_c 336-446
Cluster members and taxonomy
Representative gene: GCF_003434125#DW905_RS04635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003434125
AssemblyASM343412v1 · Scaffoldhaploid
Genome composition2 969 799 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 39 · HK 17 · RR 21CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key