1 Response_reg#1
5-119 aa · 115 aa · 21.3% of protein
Raw token
Response_reg:5:2.66e-24:119:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DQQ01_RS15530
Response regulator, unclassified
Blautia argi · GCF_003287895
ClassRRTypeunclassifiedLength540 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287895#DQQ01_RS15530Stable P2CS identifier used across views.
GenomeGCF_003287895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length540 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 540 aa (35.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa540 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
446-485 aa · 40 aa · 7.4% of protein
Raw token
HTH_AraC:446:0.00000842:485:40:423 HTH_AraC#3
501-537 aa · 37 aa · 6.9% of protein
Raw token
HTH_AraC:501:0.000000243:537:37:42- Raw architecture: Response_reg:5:2.66e-24:119:115:111#HTH_AraC:446:0.00000842:485:40:42#HTH_AraC:501:0.000000243:537:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287895::NZ_CP030280.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3229313-3232749Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDQQ01_15525RefSeq proteinWP_111920738.1
Context group ID
GCF_003287895::NZ_CP030280.1::G00054Context members
DQQ01_RS15525DQQ01_RS15530
Partner locus tags
DQQ01_RS15525DQQ01_RS15530
Partner old locus tags
DQQ01_15520DQQ01_15525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_111920738.1Primary protein accession used for annex mappings.
UniProt accessionA0A2Z4UEA6Primary UniProt accession resolved in the annex database.
UniProt IDA0A2Z4UEA6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDQQ01_RS15530Primary locus identifier stored in the genes table.
Old locus tagDQQ01_15525Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030280.1Sequence record reported by the local genomic context database.
Genomic interval3 231 127-3 232 749 nt1 623 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 229 313-3 232 749 ntGCF_003287895::NZ_CP030280.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287895::NZ_CP030280.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030280.1All displayed genes belong to this local TCS context.
Neighborhood span3 229 313-3 232 749 nt3 437 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 229 313 nt3 232 749 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DQQ01_RS15525GCF_003287895#DQQ01_RS15525
HKClassic
3 229 313-3 231 142 nt · Forward (+)
DQQ01_RS15530GCF_003287895#DQQ01_RS15530
RRunclassifiedCurrent focus
3 231 127-3 232 749 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287895#DQQ01_RS15530The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0089785
Simplified PFAM architecture for RROC_0089785
PFAM domain coverage: 192 / 540 aa (35.6%)
1 aa540 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-118] | HTH_18[460-537]
- Domain count: 2
- Matched identifier: RROC_0089785
- Positioned domains: Response_reg 5-118 ; Response_reg 5-118 ; HTH_18 460-537 ; HTH_18 460-537
Cluster members and taxonomy
Representative gene: GCF_003287895#DQQ01_RS15530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 897 · GCF_003287895
AssemblyASM328789v1 · Complete Genomereference genome · haploid
Genome composition3 297 975 bp · 42,0% GCBlautia argi
Signal transduction countsGenes 100 · HK 50 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key