1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:2.12e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DQQ01_RS01865
Response regulator OmpR family
Blautia argi · GCF_003287895
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287895#DQQ01_RS01865Stable P2CS identifier used across views.
GenomeGCF_003287895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 237 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-233 aa · 74 aa · 31.2% of protein
Raw token
Trans_reg_C:160:1.38e-28:233:75:77- Raw architecture: Response_reg:6:2.12e-35:115:111:111#Trans_reg_C:160:1.38e-28:233:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287895::NZ_CP030280.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span361799-364718Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDQQ01_01870RefSeq proteinWP_111917945.1
Context group ID
GCF_003287895::NZ_CP030280.1::G00005Context members
DQQ01_RS01860DQQ01_RS01865
Partner locus tags
DQQ01_RS01860DQQ01_RS01865
Partner old locus tags
DQQ01_01865DQQ01_01870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_111917945.1Primary protein accession used for annex mappings.
UniProt accessionA0A2Z4U7T6Primary UniProt accession resolved in the annex database.
UniProt IDA0A2Z4U7T6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDQQ01_RS01865Primary locus identifier stored in the genes table.
Old locus tagDQQ01_01870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030280.1Sequence record reported by the local genomic context database.
Genomic interval364 005-364 718 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span361 799-364 718 ntGCF_003287895::NZ_CP030280.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287895::NZ_CP030280.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030280.1All displayed genes belong to this local TCS context.
Neighborhood span361 799-364 718 nt2 920 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
361 799 nt364 718 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DQQ01_RS01860GCF_003287895#DQQ01_RS01860
HKClassic
361 799-364 033 nt · Reverse (-)
DQQ01_RS01865GCF_003287895#DQQ01_RS01865
RROmpRCurrent focus
364 005-364 718 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287895#DQQ01_RS01865The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0968163
Simplified PFAM architecture for RROC_0968163
PFAM domain coverage: 183 / 237 aa (77.2%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[160-232]
- Domain count: 2
- Matched identifier: RROC_0968163
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 160-232 ; Trans_reg_C 160-232
Cluster members and taxonomy
Representative gene: GCF_003287895#DQQ01_RS01865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 897 · GCF_003287895
AssemblyASM328789v1 · Complete Genomereference genome · haploid
Genome composition3 297 975 bp · 42,0% GCBlautia argi
Signal transduction countsGenes 100 · HK 50 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key