1 Response_reg#1
4-108 aa · 105 aa · 20.7% of protein
Raw token
Response_reg:4:3.38e-31:108:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DQQ01_RS15205
Response regulator, unclassified
Blautia argi · GCF_003287895
ClassRRTypeunclassifiedLength508 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287895#DQQ01_RS15205Stable P2CS identifier used across views.
GenomeGCF_003287895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length508 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage177 / 508 aa (34.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa508 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
407-446 aa · 40 aa · 7.9% of protein
Raw token
HTH_AraC:407:0.000000466:446:40:423 HTH_AraC#3
460-491 aa · 32 aa · 6.3% of protein
Raw token
HTH_AraC:460:0.000000392:491:32:42- Raw architecture: Response_reg:4:3.38e-31:108:105:111#HTH_AraC:407:0.000000466:446:40:42#HTH_AraC:460:0.000000392:491:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287895::NZ_CP030280.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3151632-3154833Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDQQ01_15200RefSeq proteinWP_111920686.1
Context group ID
GCF_003287895::NZ_CP030280.1::G00052Context members
DQQ01_RS15200DQQ01_RS15205
Partner locus tags
DQQ01_RS15200DQQ01_RS15205
Partner old locus tags
DQQ01_15195DQQ01_15200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_111920686.1Primary protein accession used for annex mappings.
UniProt accessionA0A2Z4UDX2Primary UniProt accession resolved in the annex database.
UniProt IDA0A2Z4UDX2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDQQ01_RS15205Primary locus identifier stored in the genes table.
Old locus tagDQQ01_15200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030280.1Sequence record reported by the local genomic context database.
Genomic interval3 153 307-3 154 833 nt1 527 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 151 632-3 154 833 ntGCF_003287895::NZ_CP030280.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287895::NZ_CP030280.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030280.1All displayed genes belong to this local TCS context.
Neighborhood span3 151 632-3 154 833 nt3 202 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 151 632 nt3 154 833 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DQQ01_RS15200GCF_003287895#DQQ01_RS15200
HKClassic
3 151 632-3 153 332 nt · Reverse (-)
DQQ01_RS15205GCF_003287895#DQQ01_RS15205
RRunclassifiedCurrent focus
3 153 307-3 154 833 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_026169175#QVE66_RS08615Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0135300
Simplified PFAM architecture for RROC_0135300
PFAM domain coverage: 189 / 516 aa (36.6%)
1 aa516 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[12-121] | HTH_18[426-504]
- Domain count: 2
- Matched identifier: RROC_0135300
- Positioned domains: Response_reg 12-121 ; HTH_18 426-504
Cluster members and taxonomy
Representative gene: GCF_026169175#QVE66_RS08615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 897 · GCF_003287895
AssemblyASM328789v1 · Complete Genomereference genome · haploid
Genome composition3 297 975 bp · 42,0% GCBlautia argi
Signal transduction countsGenes 100 · HK 50 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key