1 Response_reg#1
4-121 aa · 118 aa · 50.0% of protein
Raw token
Response_reg:4:2.13e-22:121:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N21_RS08815
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_003287475
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287475#C4N21_RS08815Stable P2CS identifier used across views.
GenomeGCF_003287475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 236 aa (88.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-227 aa · 91 aa · 38.6% of protein
Raw token
LytTR:137:3.67e-20:227:97:98- Raw architecture: Response_reg:4:2.13e-22:121:121:111#LytTR:137:3.67e-20:227:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287475::NZ_PRLF01000011.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span21051-21761Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N21_08805RefSeq proteinWP_097780964.1
Context group ID
GCF_003287475::NZ_PRLF01000011.1::G00003Context members
C4N21_RS08815
Partner locus tags
C4N21_RS08815
Partner old locus tags
C4N21_08805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097780964.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7A1K4Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7A1K4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 2Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N21_RS08815Primary locus identifier stored in the genes table.
Old locus tagC4N21_08805Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLF01000011.1Sequence record reported by the local genomic context database.
Genomic interval21 051-21 761 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 051-21 761 ntGCF_003287475::NZ_PRLF01000011.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287475::NZ_PRLF01000011.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLF01000011.1All displayed genes belong to this local TCS context.
Neighborhood span21 051-21 761 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 051 nt21 761 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C4N21_RS08815GCF_003287475#C4N21_RS08815
RRLytTRCurrent focus
21 051-21 761 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019969455#LC357_RS00390Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0539748
Simplified PFAM architecture for RROC_0539748
PFAM domain coverage: 193 / 316 aa (61.1%)
1 aa316 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[84-187] | LytTR[219-307]
- Domain count: 2
- Matched identifier: RROC_0539748
- Positioned domains: Response_reg 84-187 ; LytTR 219-307
Cluster members and taxonomy
Representative gene: GCF_019969455#LC357_RS00390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287475
AssemblyASM328747v1 · Contighaploid
Genome composition3 018 140 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 50 · HK 22 · RR 26CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key