1 Response_reg#1
84-201 aa · 118 aa · 37.3% of protein
Raw token
Response_reg:84:1.94e-22:201:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC357_RS00390
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_019969455
ClassRRTypeLytTRLength316 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019969455#LC357_RS00390Stable P2CS identifier used across views.
GenomeGCF_019969455Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length316 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 316 aa (66.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa316 aa
Domain-by-domain annotation2 items
2 LytTR#2
217-307 aa · 91 aa · 28.8% of protein
Raw token
LytTR:217:4.07e-20:307:97:98- Raw architecture: Response_reg:84:1.94e-22:201:121:111#LytTR:217:4.07e-20:307:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019969455::NZ_JAEKBW010000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span83185-84135Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_019969455::NZ_JAEKBW010000001.1::G00001Context members
LC357_RS00390
Partner locus tags
LC357_RS00390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_317851272.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC357_RS00390Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAEKBW010000001.1Sequence record reported by the local genomic context database.
Genomic interval83 185-84 135 nt951 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 185-84 135 ntGCF_019969455::NZ_JAEKBW010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019969455::NZ_JAEKBW010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKBW010000001.1All displayed genes belong to this local TCS context.
Neighborhood span83 185-84 135 nt951 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 185 nt84 135 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LC357_RS00390GCF_019969455#LC357_RS00390
RRLytTRCurrent focus
83 185-84 135 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019969455#LC357_RS00390The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0539748
Simplified PFAM architecture for RROC_0539748
PFAM domain coverage: 193 / 316 aa (61.1%)
1 aa316 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[84-187] | LytTR[219-307]
- Domain count: 2
- Matched identifier: RROC_0539748
- Positioned domains: Response_reg 84-187 ; LytTR 219-307
Cluster members and taxonomy
Representative gene: GCF_019969455#LC357_RS00390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_019969455
AssemblyASM1996945v1 · Contighaploid
Genome composition3 262 007 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 56 · HK 26 · RR 28CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key