1 Response_reg#1
4-115 aa · 112 aa · 47.9% of protein
Raw token
Response_reg:4:7.16e-34:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N21_RS03230
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_003287475
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287475#C4N21_RS03230Stable P2CS identifier used across views.
GenomeGCF_003287475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 234 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:156:2.06e-29:232:77:77- Raw architecture: Response_reg:4:7.16e-34:115:112:111#Trans_reg_C:156:2.06e-29:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287475::NZ_PRLF01000003.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1735-3954Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N21_03225RefSeq proteinWP_005921816.1
Context group ID
GCF_003287475::NZ_PRLF01000003.1::G00023Context members
C4N21_RS03230C4N21_RS03235
Partner locus tags
C4N21_RS03230C4N21_RS03235
Partner old locus tags
C4N21_03225C4N21_03230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005921816.1Primary protein accession used for annex mappings.
UniProt accessionA8S794Primary UniProt accession resolved in the annex database.
UniProt IDA8S794_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N21_RS03230Primary locus identifier stored in the genes table.
Old locus tagC4N21_03225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLF01000003.1Sequence record reported by the local genomic context database.
Genomic interval1 735-2 439 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 735-3 954 ntGCF_003287475::NZ_PRLF01000003.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287475::NZ_PRLF01000003.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLF01000003.1All displayed genes belong to this local TCS context.
Neighborhood span1 735-3 954 nt2 220 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 735 nt3 954 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C4N21_RS03230GCF_003287475#C4N21_RS03230
RROmpRCurrent focus
1 735-2 439 nt · Forward (+)
C4N21_RS03235GCF_003287475#C4N21_RS03235
HKClassic
2 530-3 954 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS03580Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047404
Simplified PFAM architecture for RROC_1047404
PFAM domain coverage: 188 / 234 aa (80.3%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-115] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_1047404
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS03580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287475
AssemblyASM328747v1 · Contighaploid
Genome composition3 018 140 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 50 · HK 22 · RR 26CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key