1 HAMP#1
176-247 aa · 72 aa · 15.2% of protein
Raw token
HAMP:176:0.000000000036:247:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N21_RS03235
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003287475
ClassHKTypeClassicLength474 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287475#C4N21_RS03235Stable P2CS identifier used across views.
GenomeGCF_003287475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length474 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 474 aa (52.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa474 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-318 aa · 68 aa · 14.3% of protein
Raw token
HisKA:251:8.29e-19:318:68:643 HATPase_c#3
364-470 aa · 107 aa · 22.6% of protein
Raw token
HATPase_c:364:3.34e-30:470:108:109- Raw architecture: HAMP:176:0.000000000036:247:72:69#HisKA:251:8.29e-19:318:68:64#HATPase_c:364:3.34e-30:470:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287475::NZ_PRLF01000003.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1735-3954Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N21_03230RefSeq proteinWP_097785330.1
Context group ID
GCF_003287475::NZ_PRLF01000003.1::G00023Context members
C4N21_RS03230C4N21_RS03235
Partner locus tags
C4N21_RS03230C4N21_RS03235
Partner old locus tags
C4N21_03225C4N21_03230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097785330.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7A9V9Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7A9V9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N21_RS03235Primary locus identifier stored in the genes table.
Old locus tagC4N21_03230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLF01000003.1Sequence record reported by the local genomic context database.
Genomic interval2 530-3 954 nt1 425 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 735-3 954 ntGCF_003287475::NZ_PRLF01000003.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287475::NZ_PRLF01000003.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLF01000003.1All displayed genes belong to this local TCS context.
Neighborhood span1 735-3 954 nt2 220 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 735 nt3 954 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C4N21_RS03230GCF_003287475#C4N21_RS03230
RROmpR
1 735-2 439 nt · Forward (+)
C4N21_RS03235GCF_003287475#C4N21_RS03235
HKClassicCurrent focus
2 530-3 954 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549945#CGS56_RS06610Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1676814
Simplified PFAM architecture for HKOC_1676814
PFAM domain coverage: 229 / 474 aa (48.3%)
1 aa474 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[194-247] | HisKA[251-318] | HATPase_c[365-471]
- Domain count: 3
- Matched identifier: HKOC_1676814
- Positioned domains: HAMP 194-247 ; HisKA 251-318 ; HATPase_c 365-471
Cluster members and taxonomy
Representative gene: GCF_002549945#CGS56_RS06610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287475
AssemblyASM328747v1 · Contighaploid
Genome composition3 018 140 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 50 · HK 22 · RR 26CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key