1 HisKA#1
349-415 aa · 67 aa · 7.8% of protein
Raw token
HisKA:349:2.17e-18:415:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N21_RS03715
Histidine kinase, Hybrid
Faecalibacterium prausnitzii · GCF_003287475
ClassHKTypeHybridLength859 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287475#C4N21_RS03715Stable P2CS identifier used across views.
GenomeGCF_003287475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length859 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage415 / 859 aa (48.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa859 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
462-576 aa · 115 aa · 13.4% of protein
Raw token
HATPase_c:462:3.53e-31:576:115:1093 Response_reg#3
599-714 aa · 116 aa · 13.5% of protein
Raw token
Response_reg:599:0.00000000000000288:714:116:1114 Response_reg#4
739-855 aa · 117 aa · 13.6% of protein
Raw token
Response_reg:739:1.65e-33:855:117:111- Raw architecture: HisKA:349:2.17e-18:415:67:64#HATPase_c:462:3.53e-31:576:115:109#Response_reg:599:0.00000000000000288:714:116:111#Response_reg:739:1.65e-33:855:117:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287475::NZ_PRLF01000003.1::G00025
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span103857-106436Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N21_03710RefSeq proteinWP_223450749.1
Context group ID
GCF_003287475::NZ_PRLF01000003.1::G00025Context members
C4N21_RS03715
Partner locus tags
C4N21_RS03715
Partner old locus tags
C4N21_03710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_223450749.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N21_RS03715Primary locus identifier stored in the genes table.
Old locus tagC4N21_03710Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLF01000003.1Sequence record reported by the local genomic context database.
Genomic interval103 857-106 436 nt2 580 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span103 857-106 436 ntGCF_003287475::NZ_PRLF01000003.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287475::NZ_PRLF01000003.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLF01000003.1All displayed genes belong to this local TCS context.
Neighborhood span103 857-106 436 nt2 580 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 857 nt106 436 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C4N21_RS03715GCF_003287475#C4N21_RS03715
HKHybridCurrent focus
103 857-106 436 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209855#FPR_RS06385Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0473021
Simplified PFAM architecture for HKOC_0473021
PFAM domain coverage: 412 / 859 aa (48.0%)
1 aa859 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[349-415] | HATPase_c[463-576] | Response_reg[599-713] | Response_reg[739-854]
- Domain count: 4
- Matched identifier: HKOC_0473021
- Positioned domains: HisKA 349-415 ; HATPase_c 463-576 ; Response_reg 599-713 ; Response_reg 739-854
Cluster members and taxonomy
Representative gene: GCF_000209855#FPR_RS06385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287475
AssemblyASM328747v1 · Contighaploid
Genome composition3 018 140 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 50 · HK 22 · RR 26CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key