1 HAMP#1
84-148 aa · 65 aa · 17.2% of protein
Raw token
HAMP:84:0.000000000368:148:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N24_RS13960
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003287405
ClassHKTypeClassicLength377 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287405#C4N24_RS13960Stable P2CS identifier used across views.
GenomeGCF_003287405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length377 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage231 / 377 aa (61.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa377 aa
Domain-by-domain annotation3 items
2 HisKA#2
161-228 aa · 68 aa · 18.0% of protein
Raw token
HisKA:161:0.000000123:228:68:643 HATPase_c#3
278-375 aa · 98 aa · 26.0% of protein
Raw token
HATPase_c:278:2.75e-19:375:101:109- Raw architecture: HAMP:84:0.000000000368:148:65:69#HisKA:161:0.000000123:228:68:64#HATPase_c:278:2.75e-19:375:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287405::NZ_PRLD01000022.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7804-9599Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N24_13945RefSeq proteinWP_112091908.1
Context group ID
GCF_003287405::NZ_PRLD01000022.1::G00008Context members
C4N24_RS13955C4N24_RS13960
Partner locus tags
C4N24_RS13955C4N24_RS13960
Partner old locus tags
C4N24_13940C4N24_13945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112091908.1Primary protein accession used for annex mappings.
UniProt accessionA0A329U100Primary UniProt accession resolved in the annex database.
UniProt IDA0A329U100_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N24_RS13960Primary locus identifier stored in the genes table.
Old locus tagC4N24_13945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLD01000022.1Sequence record reported by the local genomic context database.
Genomic interval8 466-9 599 nt1 134 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 804-9 599 ntGCF_003287405::NZ_PRLD01000022.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287405::NZ_PRLD01000022.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLD01000022.1All displayed genes belong to this local TCS context.
Neighborhood span7 804-9 599 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 804 nt9 599 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C4N24_RS13955GCF_003287405#C4N24_RS13955
RROmpR
7 804-8 478 nt · Forward (+)
C4N24_RS13960GCF_003287405#C4N24_RS13960
HKClassicCurrent focus
8 466-9 599 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287405#C4N24_RS13960The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2635830
Simplified PFAM architecture for HKOC_2635830
PFAM domain coverage: 207 / 377 aa (54.9%)
1 aa377 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[99-149] | HisKA[162-227] | HATPase_c[276-365]
- Domain count: 3
- Matched identifier: HKOC_2635830
- Positioned domains: HAMP 99-149 ; HisKA 162-227 ; HATPase_c 276-365
Cluster members and taxonomy
Representative gene: GCF_003287405#C4N24_RS13960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287405
AssemblyASM328740v1 · Contighaploid
Genome composition3 032 382 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 58 · HK 26 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key