1 Response_reg#1
5-112 aa · 108 aa · 49.1% of protein
Raw token
Response_reg:5:8.73e-35:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N24_RS13350
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_003287405
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287405#C4N24_RS13350Stable P2CS identifier used across views.
GenomeGCF_003287405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 220 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.6% of protein
Raw token
Trans_reg_C:146:1.11e-24:219:76:77- Raw architecture: Response_reg:5:8.73e-35:112:110:111#Trans_reg_C:146:1.11e-24:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287405::NZ_PRLD01000018.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12792-14809Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N24_13335RefSeq proteinWP_181573094.1
Context group ID
GCF_003287405::NZ_PRLD01000018.1::G00005Context members
C4N24_RS13350C4N24_RS13355
Partner locus tags
C4N24_RS13350C4N24_RS13355
Partner old locus tags
C4N24_13335C4N24_13340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181573094.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N24_RS13350Primary locus identifier stored in the genes table.
Old locus tagC4N24_13335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLD01000018.1Sequence record reported by the local genomic context database.
Genomic interval12 792-13 454 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 792-14 809 ntGCF_003287405::NZ_PRLD01000018.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287405::NZ_PRLD01000018.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLD01000018.1All displayed genes belong to this local TCS context.
Neighborhood span12 792-14 809 nt2 018 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 792 nt14 809 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C4N24_RS13350GCF_003287405#C4N24_RS13350
RROmpRCurrent focus
12 792-13 454 nt · Forward (+)
C4N24_RS13355GCF_003287405#C4N24_RS13355
HKClassic
13 445-14 809 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287405#C4N24_RS13350The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1732005
Simplified PFAM architecture for RROC_1732005
PFAM domain coverage: 180 / 220 aa (81.8%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[146-218]
- Domain count: 2
- Matched identifier: RROC_1732005
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; Trans_reg_C 146-218 ; Trans_reg_C 146-218
Cluster members and taxonomy
Representative gene: GCF_003287405#C4N24_RS13350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287405
AssemblyASM328740v1 · Contighaploid
Genome composition3 032 382 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 58 · HK 26 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key