1 PBPb#1
45-262 aa · 218 aa · 23.0% of protein
Raw token
PBPb:45:8.98e-29:262:231:219P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N24_RS11965
Histidine kinase, Hybrid
Faecalibacterium prausnitzii · GCF_003287405
ClassHKTypeHybridLength948 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287405#C4N24_RS11965Stable P2CS identifier used across views.
GenomeGCF_003287405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
PBPbHisKAHATPase_cResponse_reg
Protein length948 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage720 / 948 aa (75.9%)Merged over positioned domains only.
Domain description2 PBPb,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa948 aa
Domain-by-domain annotation5 items
2 PBPb#2
284-486 aa · 203 aa · 21.4% of protein
Raw token
PBPb:284:0.0000000000123:486:220:2193 HisKA#3
573-638 aa · 66 aa · 7.0% of protein
Raw token
HisKA:573:5.64e-17:638:66:644 HATPase_c#4
685-803 aa · 119 aa · 12.6% of protein
Raw token
HATPase_c:685:3.01e-28:803:119:1095 Response_reg#5
828-941 aa · 114 aa · 12.0% of protein
Raw token
Response_reg:828:2.53e-30:941:114:111- Raw architecture: PBPb:45:8.98e-29:262:231:219#PBPb:284:0.0000000000123:486:220:219#HisKA:573:5.64e-17:638:66:64#HATPase_c:685:3.01e-28:803:119:109#Response_reg:828:2.53e-30:941:114:111
- Domain description: 2 PBPb,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287405::NZ_PRLD01000013.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span30479-33325Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N24_11955RefSeq proteinWP_112091602.1
Context group ID
GCF_003287405::NZ_PRLD01000013.1::G00003Context members
C4N24_RS11965
Partner locus tags
C4N24_RS11965
Partner old locus tags
C4N24_11955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112091602.1Primary protein accession used for annex mappings.
UniProt accessionA0A329U526Primary UniProt accession resolved in the annex database.
UniProt IDA0A329U526_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N24_RS11965Primary locus identifier stored in the genes table.
Old locus tagC4N24_11955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLD01000013.1Sequence record reported by the local genomic context database.
Genomic interval30 479-33 325 nt2 847 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 479-33 325 ntGCF_003287405::NZ_PRLD01000013.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287405::NZ_PRLD01000013.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLD01000013.1All displayed genes belong to this local TCS context.
Neighborhood span30 479-33 325 nt2 847 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 479 nt33 325 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C4N24_RS11965GCF_003287405#C4N24_RS11965
HKHybridCurrent focus
30 479-33 325 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287405#C4N24_RS11965The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0330830
Simplified PFAM architecture for HKOC_0330830
PFAM domain coverage: 507 / 948 aa (53.5%)
1 aa948 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[54-262] | HisKA[573-638] | HATPase_c[686-801] | Response_reg[828-943]
- Domain count: 4
- Matched identifier: HKOC_0330830
- Positioned domains: SBP_bac_3 54-262 ; HisKA 573-638 ; HATPase_c 686-801 ; Response_reg 828-943
Cluster members and taxonomy
Representative gene: GCF_003287405#C4N24_RS11965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287405
AssemblyASM328740v1 · Contighaploid
Genome composition3 032 382 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 58 · HK 26 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key