1 GAF_3#1
221-344 aa · 124 aa · 20.9% of protein
Raw token
GAF_3:221:0.000000389:344:131:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N24_RS09765
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003287405
ClassHKTypeClassicLength592 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287405#C4N24_RS09765Stable P2CS identifier used across views.
GenomeGCF_003287405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
GAF_3HisKAHATPase_c
Protein length592 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage301 / 592 aa (50.8%)Merged over positioned domains only.
Domain description1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa592 aa
Domain-by-domain annotation3 items
2 HisKA#2
364-431 aa · 68 aa · 11.5% of protein
Raw token
HisKA:364:0.0000000000112:431:68:643 HATPase_c#3
476-584 aa · 109 aa · 18.4% of protein
Raw token
HATPase_c:476:1.18e-27:584:109:109- Raw architecture: GAF_3:221:0.000000389:344:131:129#HisKA:364:0.0000000000112:431:68:64#HATPase_c:476:1.18e-27:584:109:109
- Domain description: 1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287405::NZ_PRLD01000009.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34062-36543Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N24_09750RefSeq proteinWP_242983233.1
Context group ID
GCF_003287405::NZ_PRLD01000009.1::G00032Context members
C4N24_RS09765C4N24_RS09770
Partner locus tags
C4N24_RS09765C4N24_RS09770
Partner old locus tags
C4N24_09750C4N24_09755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242983233.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N24_RS09765Primary locus identifier stored in the genes table.
Old locus tagC4N24_09750Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLD01000009.1Sequence record reported by the local genomic context database.
Genomic interval34 062-35 840 nt1 779 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 062-36 543 ntGCF_003287405::NZ_PRLD01000009.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287405::NZ_PRLD01000009.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLD01000009.1All displayed genes belong to this local TCS context.
Neighborhood span34 062-36 543 nt2 482 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 062 nt36 543 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C4N24_RS09765GCF_003287405#C4N24_RS09765
HKClassicCurrent focus
34 062-35 840 nt · Forward (+)
C4N24_RS09770GCF_003287405#C4N24_RS09770
RROmpR
35 833-36 543 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287405#C4N24_RS09765The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1100510
Simplified PFAM architecture for HKOC_1100510
PFAM domain coverage: 285 / 592 aa (48.1%)
1 aa592 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[95-201] | HisKA[364-431] | HATPase_c[476-585]
- Domain count: 3
- Matched identifier: HKOC_1100510
- Positioned domains: DUF4118 95-201 ; HisKA 364-431 ; HATPase_c 476-585
Cluster members and taxonomy
Representative gene: GCF_003287405#C4N24_RS09765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287405
AssemblyASM328740v1 · Contighaploid
Genome composition3 032 382 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 58 · HK 26 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key