1 HAMP#1
159-225 aa · 67 aa · 14.8% of protein
Raw token
HAMP:159:0.00000444:225:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N24_RS09610
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003287405
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287405#C4N24_RS09610Stable P2CS identifier used across views.
GenomeGCF_003287405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 454 aa (52.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation3 items
2 HisKA#2
236-302 aa · 67 aa · 14.8% of protein
Raw token
HisKA:236:0.00000000000291:302:67:643 HATPase_c#3
351-454 aa · 104 aa · 22.9% of protein
Raw token
HATPase_c:351:5.59e-19:454:108:109- Raw architecture: HAMP:159:0.00000444:225:69:69#HisKA:236:0.00000000000291:302:67:64#HATPase_c:351:5.59e-19:454:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287405::NZ_PRLD01000009.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5459-7539Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N24_09595RefSeq proteinWP_112091231.1
Context group ID
GCF_003287405::NZ_PRLD01000009.1::G00031Context members
C4N24_RS09605C4N24_RS09610
Partner locus tags
C4N24_RS09605C4N24_RS09610
Partner old locus tags
C4N24_09590C4N24_09595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112091231.1Primary protein accession used for annex mappings.
UniProt accessionA0A329U2A2Primary UniProt accession resolved in the annex database.
UniProt IDA0A329U2A2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N24_RS09610Primary locus identifier stored in the genes table.
Old locus tagC4N24_09595Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLD01000009.1Sequence record reported by the local genomic context database.
Genomic interval6 175-7 539 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 459-7 539 ntGCF_003287405::NZ_PRLD01000009.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287405::NZ_PRLD01000009.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLD01000009.1All displayed genes belong to this local TCS context.
Neighborhood span5 459-7 539 nt2 081 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 459 nt7 539 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C4N24_RS09605GCF_003287405#C4N24_RS09605
RROmpR
5 459-6 178 nt · Forward (+)
C4N24_RS09610GCF_003287405#C4N24_RS09610
HKClassicCurrent focus
6 175-7 539 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287405#C4N24_RS09610The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1914954
Simplified PFAM architecture for HKOC_1914954
PFAM domain coverage: 170 / 454 aa (37.4%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[236-302] | HATPase_c[351-453]
- Domain count: 2
- Matched identifier: HKOC_1914954
- Positioned domains: HisKA 236-302 ; HATPase_c 351-453
Cluster members and taxonomy
Representative gene: GCF_003287405#C4N24_RS09610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287405
AssemblyASM328740v1 · Contighaploid
Genome composition3 032 382 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 58 · HK 26 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key