1 Response_reg#1
4-112 aa · 109 aa · 48.2% of protein
Raw token
Response_reg:4:6.95e-32:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N24_RS08005
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_003287405
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287405#C4N24_RS08005Stable P2CS identifier used across views.
GenomeGCF_003287405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 226 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-222 aa · 79 aa · 35.0% of protein
Raw token
Trans_reg_C:144:3.38e-25:222:79:77- Raw architecture: Response_reg:4:6.95e-32:112:111:111#Trans_reg_C:144:3.38e-25:222:79:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287405::NZ_PRLD01000006.1::G00028
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span171778-172458Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N24_07995RefSeq proteinWP_112090988.1
Context group ID
GCF_003287405::NZ_PRLD01000006.1::G00028Context members
C4N24_RS08005
Partner locus tags
C4N24_RS08005
Partner old locus tags
C4N24_07995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112090988.1Primary protein accession used for annex mappings.
UniProt accessionA0A329U6K2Primary UniProt accession resolved in the annex database.
UniProt IDA0A329U6K2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N24_RS08005Primary locus identifier stored in the genes table.
Old locus tagC4N24_07995Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLD01000006.1Sequence record reported by the local genomic context database.
Genomic interval171 778-172 458 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span171 778-172 458 ntGCF_003287405::NZ_PRLD01000006.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287405::NZ_PRLD01000006.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLD01000006.1All displayed genes belong to this local TCS context.
Neighborhood span171 778-172 458 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
171 778 nt172 458 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C4N24_RS08005GCF_003287405#C4N24_RS08005
RROmpRCurrent focus
171 778-172 458 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287405#C4N24_RS08005The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1420778
Simplified PFAM architecture for RROC_1420778
PFAM domain coverage: 186 / 226 aa (82.3%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[144-221]
- Domain count: 2
- Matched identifier: RROC_1420778
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 144-221 ; Trans_reg_C 144-221
Cluster members and taxonomy
Representative gene: GCF_003287405#C4N24_RS08005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287405
AssemblyASM328740v1 · Contighaploid
Genome composition3 032 382 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 58 · HK 26 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key