1 HisKA#1
347-413 aa · 67 aa · 7.8% of protein
Raw token
HisKA:347:2.23e-18:413:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N24_RS06515
Histidine kinase, Hybrid
Faecalibacterium prausnitzii · GCF_003287405
ClassHKTypeHybridLength857 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287405#C4N24_RS06515Stable P2CS identifier used across views.
GenomeGCF_003287405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length857 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage415 / 857 aa (48.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa857 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
460-574 aa · 115 aa · 13.4% of protein
Raw token
HATPase_c:460:7.82e-32:574:115:1093 Response_reg#3
597-712 aa · 116 aa · 13.5% of protein
Raw token
Response_reg:597:0.000000000000003:712:116:1114 Response_reg#4
737-853 aa · 117 aa · 13.7% of protein
Raw token
Response_reg:737:6.07e-34:853:117:111- Raw architecture: HisKA:347:2.23e-18:413:67:64#HATPase_c:460:7.82e-32:574:115:109#Response_reg:597:0.000000000000003:712:116:111#Response_reg:737:6.07e-34:853:117:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287405::NZ_PRLD01000005.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span71695-74268Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N24_06505RefSeq proteinWP_242983204.1
Context group ID
GCF_003287405::NZ_PRLD01000005.1::G00023Context members
C4N24_RS06515
Partner locus tags
C4N24_RS06515
Partner old locus tags
C4N24_06505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242983204.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N24_RS06515Primary locus identifier stored in the genes table.
Old locus tagC4N24_06505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLD01000005.1Sequence record reported by the local genomic context database.
Genomic interval71 695-74 268 nt2 574 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span71 695-74 268 ntGCF_003287405::NZ_PRLD01000005.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287405::NZ_PRLD01000005.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLD01000005.1All displayed genes belong to this local TCS context.
Neighborhood span71 695-74 268 nt2 574 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 695 nt74 268 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C4N24_RS06515GCF_003287405#C4N24_RS06515
HKHybridCurrent focus
71 695-74 268 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287405#C4N24_RS06515The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0476985
Simplified PFAM architecture for HKOC_0476985
PFAM domain coverage: 412 / 857 aa (48.1%)
1 aa857 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[347-413] | HATPase_c[461-574] | Response_reg[597-711] | Response_reg[737-852]
- Domain count: 4
- Matched identifier: HKOC_0476985
- Positioned domains: HisKA 347-413 ; HATPase_c 461-574 ; Response_reg 597-711 ; Response_reg 737-852
Cluster members and taxonomy
Representative gene: GCF_003287405#C4N24_RS06515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287405
AssemblyASM328740v1 · Contighaploid
Genome composition3 032 382 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 58 · HK 26 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key