1 PAS_3#1
38-126 aa · 89 aa · 12.7% of protein
Raw token
PAS_3:38:0.0000000000451:126:92:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N24_RS06505
Response regulator, RpfG family
Faecalibacterium prausnitzii · GCF_003287405
ClassRRTypeRpfGLength701 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287405#C4N24_RS06505Stable P2CS identifier used across views.
GenomeGCF_003287405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
PAS_3GGDEFResponse_regHD
Protein length701 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage438 / 701 aa (62.5%)Merged over positioned domains only.
Domain description1 PAS_3,1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa701 aa
Domain-by-domain annotation4 items
2 GGDEF#2
190-334 aa · 145 aa · 20.7% of protein
Raw token
GGDEF:190:6.01e-37:334:156:1603 Response_reg#3
359-463 aa · 105 aa · 15.0% of protein
Raw token
Response_reg:359:5.55e-26:463:106:1114 HD#4
554-652 aa · 99 aa · 14.1% of protein
Raw token
HD:554:0.00000000000289:652:99:110- Raw architecture: PAS_3:38:0.0000000000451:126:92:89#GGDEF:190:6.01e-37:334:156:160#Response_reg:359:5.55e-26:463:106:111#HD:554:0.00000000000289:652:99:110
- Domain description: 1 PAS_3,1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287405::NZ_PRLD01000005.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span68755-70860Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N24_06495RefSeq proteinWP_112090772.1
Context group ID
GCF_003287405::NZ_PRLD01000005.1::G00022Context members
C4N24_RS06505
Partner locus tags
C4N24_RS06505
Partner old locus tags
C4N24_06495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112090772.1Primary protein accession used for annex mappings.
UniProt accessionA0A329U5S6Primary UniProt accession resolved in the annex database.
UniProt IDA0A329U5S6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N24_RS06505Primary locus identifier stored in the genes table.
Old locus tagC4N24_06495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLD01000005.1Sequence record reported by the local genomic context database.
Genomic interval68 755-70 860 nt2 106 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span68 755-70 860 ntGCF_003287405::NZ_PRLD01000005.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287405::NZ_PRLD01000005.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLD01000005.1All displayed genes belong to this local TCS context.
Neighborhood span68 755-70 860 nt2 106 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 755 nt70 860 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C4N24_RS06505GCF_003287405#C4N24_RS06505
RRRpfGCurrent focus
68 755-70 860 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287405#C4N24_RS06505The current gene is the representative for this cluster.
PFAM architecturePAS_3 + GGDEF + Response_reg + HD_54 domains in the representative PFAM annotation.
PFAM architecture for RROC_0029658
Simplified PFAM architecture for RROC_0029658
PFAM domain coverage: 477 / 701 aa (68.0%)
1 aa701 aa
PAS_3GGDEFResponse_regHD_5
- Simplified architecture: PAS_3 + GGDEF + Response_reg + HD_5
- Raw architecture: PAS_3[39-119] | GGDEF[190-334] | Response_reg[359-465] | HD_5[531-674]
- Domain count: 4
- Matched identifier: RROC_0029658
- Positioned domains: PAS_3 39-119 ; PAS_3 39-119 ; GGDEF 190-334 ; GGDEF 190-334 ; Response_reg 359-465 ; Response_reg 359-465 ; HD_5 531-674 ; HD_5 531-674
Cluster members and taxonomy
Representative gene: GCF_003287405#C4N24_RS06505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287405
AssemblyASM328740v1 · Contighaploid
Genome composition3 032 382 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 58 · HK 26 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key