1 Response_reg#1
7-111 aa · 105 aa · 13.3% of protein
Raw token
Response_reg:7:9.76e-25:111:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N24_RS04265
Response regulator, RpfG family
Faecalibacterium prausnitzii · GCF_003287405
ClassRRTypeRpfGLength787 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287405#C4N24_RS04265Stable P2CS identifier used across views.
GenomeGCF_003287405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length787 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage356 / 787 aa (45.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa787 aa
Domain-by-domain annotation3 items
2 HD#2
195-301 aa · 107 aa · 13.6% of protein
Raw token
HD:195:0.000000000000219:301:107:1103 GGDEF#3
644-787 aa · 144 aa · 18.3% of protein
Raw token
GGDEF:644:2.23e-40:787:158:160- Raw architecture: Response_reg:7:9.76e-25:111:106:111#HD:195:0.000000000000219:301:107:110#GGDEF:644:2.23e-40:787:158:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287405::NZ_PRLD01000003.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span127208-129571Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N24_04260RefSeq proteinWP_112090446.1
Context group ID
GCF_003287405::NZ_PRLD01000003.1::G00018Context members
C4N24_RS04265
Partner locus tags
C4N24_RS04265
Partner old locus tags
C4N24_04260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112090446.1Primary protein accession used for annex mappings.
UniProt accessionA0A329UDF5Primary UniProt accession resolved in the annex database.
UniProt IDA0A329UDF5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N24_RS04265Primary locus identifier stored in the genes table.
Old locus tagC4N24_04260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLD01000003.1Sequence record reported by the local genomic context database.
Genomic interval127 208-129 571 nt2 364 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span127 208-129 571 ntGCF_003287405::NZ_PRLD01000003.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287405::NZ_PRLD01000003.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLD01000003.1All displayed genes belong to this local TCS context.
Neighborhood span127 208-129 571 nt2 364 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
127 208 nt129 571 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C4N24_RS04265GCF_003287405#C4N24_RS04265
RRRpfGCurrent focus
127 208-129 571 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287405#C4N24_RS04265The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0016709
Simplified PFAM architecture for RROC_0016709
PFAM domain coverage: 387 / 787 aa (49.2%)
1 aa787 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[7-116] | HD_5[188-320] | GGDEF[644-787]
- Domain count: 3
- Matched identifier: RROC_0016709
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; HD_5 188-320 ; HD_5 188-320 ; GGDEF 644-787 ; GGDEF 644-787
Cluster members and taxonomy
Representative gene: GCF_003287405#C4N24_RS04265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287405
AssemblyASM328740v1 · Contighaploid
Genome composition3 032 382 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 58 · HK 26 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key