1 Response_reg#1
24-136 aa · 113 aa · 30.9% of protein
Raw token
Response_reg:24:1.82e-27:136:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N24_RS04055
Response regulator RpfG family
Faecalibacterium prausnitzii · GCF_003287405
ClassRRTypeRpfGLength366 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287405#C4N24_RS04055Stable P2CS identifier used across views.
GenomeGCF_003287405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage246 / 366 aa (67.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation2 items
2 HD#2
184-316 aa · 133 aa · 36.3% of protein
Raw token
HD:184:0.0000000000149:316:133:110- Raw architecture: Response_reg:24:1.82e-27:136:114:111#HD:184:0.0000000000149:316:133:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287405::NZ_PRLD01000003.1::G00017
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span78234-79334Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N24_04050RefSeq proteinWP_181573048.1
Context group ID
GCF_003287405::NZ_PRLD01000003.1::G00017Context members
C4N24_RS04055
Partner locus tags
C4N24_RS04055
Partner old locus tags
C4N24_04050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_181573048.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1C1C4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1C1C4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N24_RS04055Primary locus identifier stored in the genes table.
Old locus tagC4N24_04050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLD01000003.1Sequence record reported by the local genomic context database.
Genomic interval78 234-79 334 nt1 101 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span78 234-79 334 ntGCF_003287405::NZ_PRLD01000003.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287405::NZ_PRLD01000003.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLD01000003.1All displayed genes belong to this local TCS context.
Neighborhood span78 234-79 334 nt1 101 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 234 nt79 334 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C4N24_RS04055GCF_003287405#C4N24_RS04055
RRRpfGCurrent focus
78 234-79 334 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287405#C4N24_RS04055The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0448476
Simplified PFAM architecture for RROC_0448476
PFAM domain coverage: 241 / 366 aa (65.8%)
1 aa366 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[24-136] | HD_5[197-324]
- Domain count: 2
- Matched identifier: RROC_0448476
- Positioned domains: Response_reg 24-136 ; Response_reg 24-136 ; HD_5 197-324 ; HD_5 197-324
Cluster members and taxonomy
Representative gene: GCF_003287405#C4N24_RS04055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287405
AssemblyASM328740v1 · Contighaploid
Genome composition3 032 382 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 58 · HK 26 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key