1 Response_reg#1
4-108 aa · 105 aa · 44.9% of protein
Raw token
Response_reg:4:1.69e-17:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N24_RS03760
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_003287405
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287405#C4N24_RS03760Stable P2CS identifier used across views.
GenomeGCF_003287405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage195 / 234 aa (83.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-226 aa · 90 aa · 38.5% of protein
Raw token
LytTR:137:5e-20:226:97:98- Raw architecture: Response_reg:4:1.69e-17:108:108:111#LytTR:137:5e-20:226:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287405::NZ_PRLD01000003.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span17524-18228Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N24_03755RefSeq proteinWP_112090379.1
Context group ID
GCF_003287405::NZ_PRLD01000003.1::G00016Context members
C4N24_RS03760
Partner locus tags
C4N24_RS03760
Partner old locus tags
C4N24_03755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112090379.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1C4S5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1C4S5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N24_RS03760Primary locus identifier stored in the genes table.
Old locus tagC4N24_03755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLD01000003.1Sequence record reported by the local genomic context database.
Genomic interval17 524-18 228 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 524-18 228 ntGCF_003287405::NZ_PRLD01000003.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287405::NZ_PRLD01000003.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLD01000003.1All displayed genes belong to this local TCS context.
Neighborhood span17 524-18 228 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 524 nt18 228 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C4N24_RS03760GCF_003287405#C4N24_RS03760
RRLytTRCurrent focus
17 524-18 228 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287405#C4N24_RS03760The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1055188
Simplified PFAM architecture for RROC_1055188
PFAM domain coverage: 199 / 234 aa (85.0%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-113] | LytTR[138-226]
- Domain count: 2
- Matched identifier: RROC_1055188
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; LytTR 138-226 ; LytTR 138-226
Cluster members and taxonomy
Representative gene: GCF_003287405#C4N24_RS03760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287405
AssemblyASM328740v1 · Contighaploid
Genome composition3 032 382 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 58 · HK 26 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key