1 HAMP#1
196-264 aa · 69 aa · 13.6% of protein
Raw token
HAMP:196:0.000000000221:264:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N24_RS03400
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003287405
ClassHKTypeClassicLength509 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287405#C4N24_RS03400Stable P2CS identifier used across views.
GenomeGCF_003287405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length509 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage254 / 509 aa (49.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa509 aa
Domain-by-domain annotation3 items
2 His_kinase#2
296-375 aa · 80 aa · 15.7% of protein
Raw token
His_kinase:296:3.89e-29:375:80:803 HATPase_c#3
396-500 aa · 105 aa · 20.6% of protein
Raw token
HATPase_c:396:0.00000000000000357:500:108:109- Raw architecture: HAMP:196:0.000000000221:264:69:69#His_kinase:296:3.89e-29:375:80:80#HATPase_c:396:0.00000000000000357:500:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287405::NZ_PRLD01000002.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span221487-223828Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N24_03395RefSeq proteinWP_112090319.1
Context group ID
GCF_003287405::NZ_PRLD01000002.1::G00012Context members
C4N24_RS03400C4N24_RS03405
Partner locus tags
C4N24_RS03400C4N24_RS03405
Partner old locus tags
C4N24_03395C4N24_03400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112090319.1Primary protein accession used for annex mappings.
UniProt accessionA0A329UE74Primary UniProt accession resolved in the annex database.
UniProt IDA0A329UE74_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N24_RS03400Primary locus identifier stored in the genes table.
Old locus tagC4N24_03395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLD01000002.1Sequence record reported by the local genomic context database.
Genomic interval221 487-223 016 nt1 530 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span221 487-223 828 ntGCF_003287405::NZ_PRLD01000002.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287405::NZ_PRLD01000002.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLD01000002.1All displayed genes belong to this local TCS context.
Neighborhood span221 487-223 828 nt2 342 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
221 487 nt223 828 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C4N24_RS03400GCF_003287405#C4N24_RS03400
HKClassicCurrent focus
221 487-223 016 nt · Forward (+)
C4N24_RS03405GCF_003287405#C4N24_RS03405
RRunclassified
223 013-223 828 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287405#C4N24_RS03400The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1433484
Simplified PFAM architecture for HKOC_1433484
PFAM domain coverage: 234 / 509 aa (46.0%)
1 aa509 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[212-261] | His_kinase[297-375] | HATPase_c[396-500]
- Domain count: 3
- Matched identifier: HKOC_1433484
- Positioned domains: HAMP 212-261 ; His_kinase 297-375 ; HATPase_c 396-500
Cluster members and taxonomy
Representative gene: GCF_003287405#C4N24_RS03400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287405
AssemblyASM328740v1 · Contighaploid
Genome composition3 032 382 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 58 · HK 26 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key