1 HAMP#1
176-246 aa · 71 aa · 15.1% of protein
Raw token
HAMP:176:2.7e-17:246:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DR013_RS14580
Histidine kinase, Classic
Clostridium paraputrificum · GCF_003284655
ClassHKTypeClassicLength471 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003284655#DR013_RS14580Stable P2CS identifier used across views.
GenomeGCF_003284655Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length471 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 471 aa (51.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa471 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-316 aa · 66 aa · 14.0% of protein
Raw token
HisKA:251:2.62e-16:316:66:643 HATPase_c#3
362-468 aa · 107 aa · 22.7% of protein
Raw token
HATPase_c:362:4.54e-22:468:108:109- Raw architecture: HAMP:176:2.7e-17:246:71:69#HisKA:251:2.62e-16:316:66:64#HATPase_c:362:4.54e-22:468:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003284655::NZ_QGMT01000028.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31749-33851Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_003284655::NZ_QGMT01000028.1::G00023Context members
DR013_RS14580DR013_RS14585
Partner locus tags
DR013_RS14580DR013_RS14585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_049178174.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDR013_RS14580Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_QGMT01000028.1Sequence record reported by the local genomic context database.
Genomic interval31 749-33 164 nt1 416 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 749-33 851 ntGCF_003284655::NZ_QGMT01000028.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003284655::NZ_QGMT01000028.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QGMT01000028.1All displayed genes belong to this local TCS context.
Neighborhood span31 749-33 851 nt2 103 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 749 nt33 851 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DR013_RS14580GCF_003284655#DR013_RS14580
HKClassicCurrent focus
31 749-33 164 nt · Reverse (-)
DR013_RS14585GCF_003284655#DR013_RS14585
RROmpR
33 165-33 851 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003284655#DR013_RS14580The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1709464
Simplified PFAM architecture for HKOC_1709464
PFAM domain coverage: 224 / 471 aa (47.6%)
1 aa471 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[195-246] | HisKA[251-316] | HATPase_c[363-468]
- Domain count: 3
- Matched identifier: HKOC_1709464
- Positioned domains: HAMP 195-246 ; HisKA 251-316 ; HATPase_c 363-468
Cluster members and taxonomy
Representative gene: GCF_003284655#DR013_RS14580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_003284655
AssemblyASM328465v1 · Scaffoldhaploid
Genome composition3 609 629 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 69 · HK 35 · RR 31CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key