1 HisKA#1
310-380 aa · 71 aa · 12.4% of protein
Raw token
HisKA:310:4.84e-16:380:71:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DR013_RS01240
Histidine kinase, Classic
Clostridium paraputrificum · GCF_003284655
ClassHKTypeClassicLength571 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003284655#DR013_RS01240Stable P2CS identifier used across views.
GenomeGCF_003284655Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length571 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 571 aa (32.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa571 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
427-540 aa · 114 aa · 20.0% of protein
Raw token
HATPase_c:427:1.17e-25:540:114:109- Raw architecture: HisKA:310:4.84e-16:380:71:64#HATPase_c:427:1.17e-25:540:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003284655::NZ_QGMT01000002.1::G00016
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span4025-5740Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_003284655::NZ_QGMT01000002.1::G00016Context members
DR013_RS01240
Partner locus tags
DR013_RS01240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_161954367.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDR013_RS01240Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_QGMT01000002.1Sequence record reported by the local genomic context database.
Genomic interval4 025-5 740 nt1 716 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 025-5 740 ntGCF_003284655::NZ_QGMT01000002.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003284655::NZ_QGMT01000002.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QGMT01000002.1All displayed genes belong to this local TCS context.
Neighborhood span4 025-5 740 nt1 716 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 025 nt5 740 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DR013_RS01240GCF_003284655#DR013_RS01240
HKClassicCurrent focus
4 025-5 740 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003284655#DR013_RS01240The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1208347
Simplified PFAM architecture for HKOC_1208347
PFAM domain coverage: 184 / 571 aa (32.2%)
1 aa571 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[310-380] | HATPase_c[427-539]
- Domain count: 2
- Matched identifier: HKOC_1208347
- Positioned domains: HisKA 310-380 ; HATPase_c 427-539
Cluster members and taxonomy
Representative gene: GCF_003284655#DR013_RS01240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_003284655
AssemblyASM328465v1 · Scaffoldhaploid
Genome composition3 609 629 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 69 · HK 35 · RR 31CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key