1 Response_reg#1
5-116 aa · 112 aa · 91.8% of protein
Raw token
Response_reg:5:6.42e-30:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5P40_RS05105
Response regulator, CheY family
Bacillus sp. SRB_8 · GCF_003264205
ClassRRTypeCheYLength122 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003264205#B5P40_RS05105Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length122 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 122 aa (91.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa122 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:6.42e-30:116:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003264205::NZ_NADT01000006.1::G00059
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45-2530Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5P40_05080RefSeq proteinWP_113708944.1
Context group ID
GCF_003264205::NZ_NADT01000006.1::G00059Context members
B5P40_RS05100B5P40_RS05105
Partner locus tags
B5P40_RS05100B5P40_RS05105
Partner old locus tags
B5P40_05075B5P40_05080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_113708944.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5P40_RS05105Primary locus identifier stored in the genes table.
Old locus tagB5P40_05080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NADT01000006.1Sequence record reported by the local genomic context database.
Genomic interval2 162-2 530 nt369 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45-2 530 ntGCF_003264205::NZ_NADT01000006.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003264205::NZ_NADT01000006.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NADT01000006.1All displayed genes belong to this local TCS context.
Neighborhood span45-2 530 nt2 486 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 nt2 530 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B5P40_RS05100GCF_003264205#B5P40_RS05100
HKCheA
45-2 033 nt · Reverse (-)
B5P40_RS05105GCF_003264205#B5P40_RS05105
RRCheYCurrent focus
2 162-2 530 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003264205#B5P40_RS05105The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2406246
Simplified PFAM architecture for RROC_2406246
PFAM domain coverage: 112 / 122 aa (91.8%)
1 aa122 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-116]
- Domain count: 1
- Matched identifier: RROC_2406246
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116
Cluster members and taxonomy
Representative gene: GCF_003264205#B5P40_RS05105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 969 377 · GCF_003264205
AssemblyASM326420v1 · Scaffoldhaploid
Genome composition6 134 098 bp · 35,0% GCBacillus sp. SRB_8
Signal transduction countsGenes 125 · HK 66 · RR 58CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key