1 CheW#1
17-149 aa · 133 aa · 44.0% of protein
Raw token
CheW:17:1.02e-39:149:134:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5P40_RS00300
Response regulator CheV family
Bacillus sp. SRB_8 · GCF_003264205
ClassRRTypeCheVLength302 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003264205#B5P40_RS00300Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 302 aa (84.8%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 Response_reg#2
176-298 aa · 123 aa · 40.7% of protein
Raw token
Response_reg:176:8.57e-17:298:124:111- Raw architecture: CheW:17:1.02e-39:149:134:138#Response_reg:176:8.57e-17:298:124:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003264205::NZ_NADT01000003.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span19924-20832Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5P40_00305RefSeq proteinWP_113708667.1
Context group ID
GCF_003264205::NZ_NADT01000003.1::G00035Context members
B5P40_RS00300
Partner locus tags
B5P40_RS00300
Partner old locus tags
B5P40_00305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_113708667.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5P40_RS00300Primary locus identifier stored in the genes table.
Old locus tagB5P40_00305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NADT01000003.1Sequence record reported by the local genomic context database.
Genomic interval19 924-20 832 nt909 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19 924-20 832 ntGCF_003264205::NZ_NADT01000003.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003264205::NZ_NADT01000003.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NADT01000003.1All displayed genes belong to this local TCS context.
Neighborhood span19 924-20 832 nt909 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 924 nt20 832 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B5P40_RS00300GCF_003264205#B5P40_RS00300
RRCheVCurrent focus
19 924-20 832 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003264205#B5P40_RS00300The current gene is the representative for this cluster.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0568995
Simplified PFAM architecture for RROC_0568995
PFAM domain coverage: 252 / 302 aa (83.4%)
1 aa302 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[18-149] | Response_reg[176-295]
- Domain count: 2
- Matched identifier: RROC_0568995
- Positioned domains: CheW 18-149 ; CheW 18-149 ; Response_reg 176-295 ; Response_reg 176-295
Cluster members and taxonomy
Representative gene: GCF_003264205#B5P40_RS00300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 969 377 · GCF_003264205
AssemblyASM326420v1 · Scaffoldhaploid
Genome composition6 134 098 bp · 35,0% GCBacillus sp. SRB_8
Signal transduction countsGenes 125 · HK 66 · RR 58CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key