1 GAF#1
237-360 aa · 124 aa · 21.1% of protein
Raw token
GAF:237:0.0000000713:360:132:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5P40_RS02480
Histidine kinase, Classic
Bacillus sp. SRB_8 · GCF_003264205
ClassHKTypeClassicLength589 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003264205#B5P40_RS02480Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFHis_kinaseHATPase_c
Protein length589 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage307 / 589 aa (52.1%)Merged over positioned domains only.
Domain description1 GAF,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa589 aa
Domain-by-domain annotation3 items
2 His_kinase#2
375-453 aa · 79 aa · 13.4% of protein
Raw token
His_kinase:375:1.05e-29:453:80:803 HATPase_c#3
473-576 aa · 104 aa · 17.7% of protein
Raw token
HATPase_c:473:0.0000000000012:576:108:109- Raw architecture: GAF:237:0.0000000713:360:132:133#His_kinase:375:1.05e-29:453:80:80#HATPase_c:473:0.0000000000012:576:108:109
- Domain description: 1 GAF,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003264205::NZ_NADT01000004.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span57433-59920Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5P40_02465RefSeq proteinWP_113708791.1
Context group ID
GCF_003264205::NZ_NADT01000004.1::G00042Context members
B5P40_RS02480B5P40_RS02485
Partner locus tags
B5P40_RS02480B5P40_RS02485
Partner old locus tags
B5P40_02465B5P40_02470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_113708791.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5P40_RS02480Primary locus identifier stored in the genes table.
Old locus tagB5P40_02465Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NADT01000004.1Sequence record reported by the local genomic context database.
Genomic interval57 433-59 202 nt1 770 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span57 433-59 920 ntGCF_003264205::NZ_NADT01000004.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003264205::NZ_NADT01000004.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NADT01000004.1All displayed genes belong to this local TCS context.
Neighborhood span57 433-59 920 nt2 488 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
57 433 nt59 920 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B5P40_RS02480GCF_003264205#B5P40_RS02480
HKClassicCurrent focus
57 433-59 202 nt · Forward (+)
B5P40_RS02485GCF_003264205#B5P40_RS02485
RRLytTR
59 180-59 920 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003264205#B5P40_RS02480The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + GAF + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1116059
Simplified PFAM architecture for HKOC_1116059
PFAM domain coverage: 483 / 589 aa (82.0%)
1 aa589 aa
5TM-5TMR_LYTGAFHis_kinaseHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + GAF + His_kinase + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[26-203] | GAF[237-359] | His_kinase[375-453] | HATPase_c[473-575]
- Domain count: 4
- Matched identifier: HKOC_1116059
- Positioned domains: 5TM-5TMR_LYT 26-203 ; GAF 237-359 ; His_kinase 375-453 ; HATPase_c 473-575
Cluster members and taxonomy
Representative gene: GCF_003264205#B5P40_RS02480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 969 377 · GCF_003264205
AssemblyASM326420v1 · Scaffoldhaploid
Genome composition6 134 098 bp · 35,0% GCBacillus sp. SRB_8
Signal transduction countsGenes 125 · HK 66 · RR 58CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key